Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq1218 129 6e-25 seq35672 107 2e-18 seq12278 91.5 1e-13 >seq1218 Length=18807 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 134504 CACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTC 134563 ||| | ||| || ||||||||||| || |||||||||||| || ||| ||| || Sbjct 15546 CACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTC 15487 Query 134564 GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTG 134623 |||||| |||||||| || |||| ||||||||| || ||||| || || || || || || Sbjct 15486 GAGCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTG 15427 Query 134624 AATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTT 134683 ||| || ||||| || | ||||| || | || ||||| | ||| || || || Sbjct 15426 AATCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTT 15367 Query 134684 ACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| | || || |||||||| ||||||||| Sbjct 15366 GCCGGTGAGCGTCTTCACGAAAATCTGCATTTTG 15333 >seq35672 Length=222 Score = 107 bits (118), Expect = 2e-18 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || ||||| || | ||| || || || ||||| |||||||||||||| | || | Sbjct 4 AGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGG 63 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || | ||| ||||| |||||||||| |||||||||||| || || || ||||| Sbjct 64 CCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCC 123 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || ||| || || || | ||||| |||| || || || || || Sbjct 124 TTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTG 183 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || ||||| | ||| || || || || |||||| Sbjct 184 ATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 222 >seq12278 Length=2500 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 8248 CAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAAT 8307 |||| ||| || || | |||||||||||||||||||||||||||||| || ||||| Sbjct 2203 CAAATCGAGACGGGCACGCCGTACATGCTGTACAAAGACGCTTGCAATCGGAAGAGCAAC 2144 Query 8308 CAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGC 8367 || | ||| |||| || || |||||||| ||||| | ||| | || |||||| | Sbjct 2143 CAGAAGAACTTGGGAACTATCAAATGCAGCAACTTGTGCACAGAAGTCGTCGAGTACA-C 2085 Query 8368 GCGC-CCGACGAAGTGGCCGTTTGCAA 8393 | || ||||| ||||| || ||||| Sbjct 2084 GAGCAAAGACGAGGTGGCTGTCTGCAA 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505168696427200