Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq36199 212 2e-49 seq35672 156 1e-32 seq1218 125 2e-23 seq7254 91.5 4e-13 >seq36199 Length=11811 Score = 212 bits (234), Expect = 2e-49 Identities = 926/1454 (64%), Gaps = 21/1454 (1%) Strand=Plus/Minus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||| | || || || | || || || |||||||| || | ||| ||| | || ||| | Sbjct 11535 GCTGTGGGTATTGACCTTGGCACCACCTATTCTTGCGTAGGTGTGTGGAAGAACGATGCT 11476 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| || || || || || || ||||| || || || || ||||| || || ||| Sbjct 11475 GTGGAAATCATCGCGAACGACCAGGGAAACAGGACGACCCCGTCCTACGTCGCGTTCACC 11416 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||| | | | |||||| |||| || || |||| || || || |||| Sbjct 11415 GACACGGAGAGACTTGTCGGTGATGCTGCGAAGAACCAAGTCGCACGCAACCCGGAAAAC 11356 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || |||| ||||| ||||| || || || | | ||| |||| || || || Sbjct 11355 ACCATTTTCGATGCCAAGCGCCTAATCGGCCGCAAGTTTGATGACCCCTCGGTCCAGTCG 11296 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || |||| || || | || | | || || || || | ||||| Sbjct 11295 GACATGAAGCATTGGCCATTCAAGGTCATCGCTGGTCCGGGAGACAAGCCCCTCATTGAA 11236 Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAATGGTTTT 349557 || || | || || || || | || |||| ||||| |||| | ||||| || Sbjct 11235 GTCACGTACCAGGGAGAG-AAGAAGACGTTCCACCCCGAAGAGGTTTCCGCCATGGTGTT 11177 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 | |||||||||||||| || || || || | || | ||| | || || || || Sbjct 11176 GGGCAAAATGAAGGAAATCGCGGAGGCTTACCTCGGCAAGGAAGTGAAGGAGGCCGTCAT 11117 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 ||| || || || || || || ||| | |||||| || || || |||||||| | ||| Sbjct 11116 TACCGTCCCCGCGTACTTCAACGATTCGCAGCGTCAGGCTACCAAGGATGCTGGTACCAT 11057 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||| || | | || || | || || || || || || || ||||| || || ||||| Sbjct 11056 TGCCGGCCTCAGCGTCCTCCGTATTATCAACGAGCCTACAGCGGCAGCCATCGCCTATGG 10997 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || || | | | | || | || | || || || || | ||||| ||||| Sbjct 10996 TCTGGACAAGAAGGGCTGCGGTGAGATGAACGTCCTCATCTTCGACATGGGTGGCGGTAC 10937 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 ||| ||||| || || || ||| | ||||| || || |||||||| || || || ||||| Sbjct 10936 TTTCGATGTGTCGCTGCTTACAATCGAAGACGGTATCTTTGAAGTCAAGGCCACCGCTGG 10877 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT--GTTAAA 349915 |||||| ||||||||||| |||||||| || || ||| | | | | || | || | Sbjct 10876 TGATACCCATCTTGGTGGTGAAGATTTCGACAACCGTTTGG--TGGACTTCTGCGTCCAG 10819 Query 349916 GAATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAA--TCCTAGAGCAATG-----CG 349968 || || ||||| |||| || | ||| || | || | ||| || || Sbjct 10818 GACTTCAAGCG-CAAG---AACCGCGGAAAGGACATCAGCACCAACAGCCGTGCCCTTCG 10763 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || | || ||| || || | ||| | | | || | || || | | Sbjct 10762 TCGGCTGCGTACCCAGTGCGAGCGCACCAAGAGAACTCTCTCTAGCAGCACTCAGGCAAC 10703 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 || |||||||| |||||| || |||| || | || | ||||| | ||||| || Sbjct 10702 CATCGAAATTGACTCTCTTTTCGAGGGCATTGACTACTCTGTGTCTATCTCCCGTGCGCG 10643 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAA--CAATGGATCCTGTGGAAAAAGTA 350146 ||||| || | || ||||| || || |||| | || || || || || || Sbjct 10642 TTTTGAGGAGCTTTGCATGGA-CTACTT-CCGCAACTCCTTGTTGCCCGTCGAGAAGGTC 10585 Query 350147 TTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCT 350206 | || || | || ||| | | | ||||| || || |||||||| ||| Sbjct 10584 CTCAAGGACTCTGGTATTGACAAGCGTTCGGTCAGCGAAGTTGTGTTGGTTGGTGGATCT 10525 Query 350207 ACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCT 350266 || ||||| || || | || ||| | | |||| || || || || || || || | Sbjct 10524 ACCCGTATCCCCAAGATCCAGCAGCTCATCACTGACTTCTTCAACGGAAAGGAGCCGTGC 10465 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 || || || || || ||||| || ||||| || ||||||||||| |||||| | || || Sbjct 10464 AGGTCGATCAACCCTGATGAGGCCGTTGCGTACGGTGCTGCTGTCCAGGCAGCGATCTTG 10405 Query 350327 TCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCG 350386 ||| || || || || | | ||| | | || || ||||| | || || || Sbjct 10404 AAGGGAGTTACCAGCTCCCAAGTGCAGGATTTGCTTCTTCTGGATGTTGCGCCCCTCTCT 10345 Query 350387 CTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGTA 350446 || || | || || |||||| || ||||| || ||| ||||| | || | Sbjct 10344 CTCGGTCTGGAGACAGCTGGTGGTGTCATGACCAAGCTGATTGAGAGAAACACAACGATC 10285 Query 350447 CCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAATT 350506 || || || ||||| || || || | || | || || || ||||||| || ||| Sbjct 10284 CCGACTAAGAAGTCTCAGACCTTCACAACGTACGCGGACAACCAGCCAGGAGTGCTGATT 10225 Query 350507 CAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTTACC 350566 || || | |||||||| ||||| || ||||| || || || || |||| | Sbjct 10224 CAGGTGTACGAAGGTGAGCGTGCGATGACCAAAGACAACAACCTCCTGGGCAAATTCCAC 10165 Query 350567 CTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGATATT 350626 | || || || || || | || || || || || |||||| |||| ||||| Sbjct 10164 TTGGATGGTATCCCCCCCGCCCCCCGTGGTGTCCCCCAAATCGAAGTCACTTTTGATATC 10105 Query 350627 GATTCAAATGGTAT 350640 || | || ||||| Sbjct 10104 GACGCTAACGGTAT 10091 >seq35672 Length=222 Score = 156 bits (172), Expect = 1e-32 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 ||| |||| || ||||| ||||| || ||||| || || ||||| | ||||| || || Sbjct 11 AGACCAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCC 69 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || | || || |||||||| || ||||| ||||||||||| ||||| ||||| || ||| Sbjct 70 TCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCC 129 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | || || || ||||| ||||| || | ||| Sbjct 130 TGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTC 189 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||||||| || || || ||||| ||||||||| Sbjct 190 TTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 222 >seq1218 Length=18807 Score = 125 bits (138), Expect = 2e-23 Identities = 154/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| || || || || || || || || || | |||| || || || | Sbjct 15543 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 15485 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || || ||||| ||||| ||||| ||||| |||||||| || |||||||||| Sbjct 15484 GCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 15425 Query 140650 TTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTC 140709 | || || || ||||| || || | ||||| || || || || | || | ||||| | Sbjct 15424 TCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 15365 Query 140710 CGGTTAGTGTTTTTACAAAAATCTGCATT 140738 |||| || || || || |||||||||||| Sbjct 15364 CGGTGAGCGTCTTCACGAAAATCTGCATT 15336 >seq7254 Length=1292 Score = 91.5 bits (100), Expect = 4e-13 Identities = 74/86 (86%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 423764 GAGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCT 423821 ||||| ||||||||||||||| |||||||| ||||||||||| |||| | || | || Sbjct 1267 GAGCACGGATGCCCGAGTGGT-TAAGGGGGTGGACTTAAGATCCCCTGGTCTAACGACCG 1209 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||| |||||||||||||||| Sbjct 1208 CGTGGGTTCGAACCCCACTCCGTGCA 1183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514548499797080