Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq12278 147 2e-30 seq36021 129 6e-25 seq2813 122 1e-22 >seq12278 Length=2500 Score = 147 bits (162), Expect = 2e-30 Identities = 406/614 (66%), Gaps = 40/614 (7%) Strand=Plus/Plus Query 78762 GGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTT 78818 |||||| ||||| | |||||| || ||| ||| | | |||||||||| | Sbjct 1748 GGCGAGCTCGCAACTGGCCTCGAGA---GCGGCGAAGTAGATACACTCGAAGATGTTTCT 1804 Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 ||| | |||| || | || |||||||| | || || | ||||||| | || || Sbjct 1805 GTTCAAGACGCGAGCTTCGGGGCTGTCGAACGGATAGCGAAGAAGCATGAAGGCGTCTGC 1864 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTC 78938 || |||||||| || | | ||| |||||||| |||| ||||||||| ||| || Sbjct 1865 GAGACCCTGGACTCCCAAACCGACAGGTCGGTGTCGCAAGTTGCTCTTCTT---CGCTTC 1921 Query 78939 GGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC----C 78991 || | ||||| |||| |||||||| |||||||||| ||| | ||| | ||| | Sbjct 1922 GGGCACAGGGTAGTAGTTTCGATCGATCACGCGGTTCAAGTTTCTCGTCATGACTTTGAC 1981 Query 78992 GAGTCACCTCGTACAATTTGGCGAAATCAAAAT----GATTTCCT--TTGATGAAAGTCG 79045 || || | || || | |||| || ||| | | || | | ||| | | Sbjct 1982 GATTCGCTTC----AAGTGTTCGAAGTCGAAAGTCCGGCTCTCGCGGTCCACGAACTTGG 2037 Query 79046 GTAGGCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGA 79105 | || | | || |||| |||||| || ||| |||||| ||| | ||||| || Sbjct 2038 GCAGCGAGACGGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTACTCGACGA 2097 Query 79106 TTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGT 79165 |||||||||||| || | ||||| || || | ||||||||||||||||||| | Sbjct 2098 CTTCTGTGCACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGAT 2157 Query 79166 TACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGC 79225 | || ||||| ||||| |||||||||||| || ||||| | || || ||||| Sbjct 2158 TGCAAGCGTCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCG 2217 Query 79226 CGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTG---TGCGACGTACG 79282 | ||| | || | | || | || | |||| ||||||| | | || ||| || Sbjct 2218 CAAACCAAAGGTGCTGAGCTGG---AATCGTCTT---CCGACCCCGACCTTCG-CGTTCG 2270 Query 79283 T----CCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCG 79338 | | ||||||||| ||||| | || || | || || | || |||||||||||| Sbjct 2271 TAGCGCTCGTACAACTCTTTGAATTCGTCGCCCCACACCTCCGTCAAACCCGGGCACTCG 2330 Query 79339 TGCGGGCACATCAG 79352 | || |||||||| Sbjct 2331 TTGGGACACATCAG 2344 >seq36021 Length=4195 Score = 129 bits (142), Expect = 6e-25 Identities = 244/356 (69%), Gaps = 6/356 (2%) Strand=Plus/Minus Query 79381 TCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCG 79440 ||||||||||| || |||||||| ||||| |||||||||||| ||| |||||| Sbjct 3968 TCCATGAAGAGATCTGGGATCCAGAGGGCACAGAAGAGGTCGCGAGCACGTCGCTCCTCC 3909 Query 79441 TCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGA 79500 | ||| |||||| | ||||| || || | || || |||||| ||||||| Sbjct 3908 TTGCCGTGGTTCTTTTTGATGTCGAGGAAATCGAAGACATCAAAGTGCCATGGCTCCAAG 3849 Query 79501 TAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTG 79560 || ||||||| || ||||| |||||||||||||||| |||||| || || | | | Sbjct 3848 TAAATGGCGAGGCTGCCTTTGCGTTTGCCGCCGCCCTGGTCGACGTAGCGCGCGGCATCG 3789 Query 79561 TTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGT 79620 ||||| |||| |||||| || | | || | | | ||| ||||| || ||| || Sbjct 3788 TTGAAGACTCTGAGCATCGGGAGAAGACCATTCGAGTAGCCATTCGTTCCTCGGAT--GT 3731 Query 79621 GTACCGCTC---GCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCACTTGGAG 79677 || | || || ||||||| | | || |||| ||||||| |||||| Sbjct 3730 -AACTGTTCGTGGCTCGAATGTCTGTCACGGCGAGACCGAGACCCCCGGCTGTCTTGGAA 3672 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCAT 79733 || |||||||| ||| | ||| | | || || ||||||||||| || | ||| Sbjct 3671 ATCAACGCGCACTGCTTTAACGTGCTGAAAATCCCATCGATCGAGTCCTCTTGCAT 3616 Score = 125 bits (138), Expect = 8e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 19422 TCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAAC 19481 |||| |||||| | ||||||||| | | || | |||||| ||||||| |||||||||| Sbjct 3767 TCCCGATGCTCAGAGTCTTCAACGATGCCGCGCGCTACGTCGACCAGGGCGGCGGCAAAC 3826 Query 19482 GCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCG 19541 |||| ||| ||||||| ||| | |||||||||||| || ||| | |||||||||| Sbjct 3827 GCAAAGGCAGCCTCGCCATTTACTTGGAGCCATGGCACTTTGATGTCTTCGATTTCCTCG 3886 Query 19542 AACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGT 19601 | | |||||| || | |||||| || ||||||||||||| ||| | | Sbjct 3887 ACATCAAAAAGAACCACGGCAAGGAGGAGCGACGTGCTCGCGACCTCTTCTGTGCCCTCT 3946 Query 19602 GGATTCCGGACCTATTCATGGA 19623 |||| || || || |||||||| Sbjct 3947 GGATCCCAGATCTCTTCATGGA 3968 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||| |||||||| |||||| ||| | | || | | || Sbjct 3165 CCCCAGCACATGCTCATGAGAGTCGCGTGCGGCATTCATTGTGGGGATGTGGAGAAAGCG 3224 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 ||| || ||||| |||||||| ||||||||||||||||| || ||||| ||||| ||| Sbjct 3225 ATCGAAACCTACGAACTGATGAGTCAGAAGTTCTTCACGCATGCAACGCCCACCCTGTTC 3284 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGT 19258 |||||||| || | |||||| ||| |||||| Sbjct 3285 AACGCCGGCACCCCCCGCCCGCAAATGAGCAGCTGT 3320 >seq2813 Length=6432 Score = 122 bits (134), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 59994 tttGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAA 60053 ||||||||||||||||| || ||||| ||| ||||| |||||||||||||| || Sbjct 3844 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 3785 Query 60054 AAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 ||||| ||| | ||||||||||| | |||||| |||||| ||||||| || |||||||| Sbjct 3784 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 3725 Query 60114 CTCCA 60118 || || Sbjct 3724 CTGCA 3720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548275495478400