Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq35672 176 5e-39 seq1218 165 9e-36 seq2813 109 6e-19 seq12278 87.8 2e-12 >seq35672 Length=222 Score = 176 bits (194), Expect = 5e-39 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| |||||||| |||||||| || ||||| |||||| | Sbjct 222 AATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTC 163 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || || ||||||||||| || ||||| || || || Sbjct 162 AGACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCA 103 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| ||||||||||| ||||| | ||||| | || || || | ||||| || Sbjct 102 GCAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAA 43 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCG 27626 | || ||||| || ||||| || | |||||||||||||| Sbjct 42 CATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGTCTTCG 1 >seq1218 Length=18807 Score = 165 bits (182), Expect = 9e-36 Identities = 159/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || || |||||||| ||||||||||| || ||| | || || ||| | Sbjct 15336 AATGCAGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAGCCTTC 15395 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | |||| | ||||| || |||||||| |||||||||||||| || ||||| Sbjct 15396 TGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCTGACCA 15455 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || ||||| |||||||| | | ||||| | ||||| || Sbjct 15456 GCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGACTACAA 15515 Query 27585 TGTCCAAAAGGAATCCACTCTTCA 27608 |||| |||||||||||||| || Sbjct 15516 CATCCAGAAGGAATCCACTCTCCA 15539 >seq2813 Length=6432 Score = 109 bits (120), Expect = 6e-19 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 64729 TTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAA 64788 ||||| || |||||||| ||| |||| ||| ||||| ||||||||||||| || Sbjct 3844 TTTGCATGCGTGGAAGGCATTCTCTTCAGTGGAAGCTTCTGCGCTATTTTCTGGCTGAAG 3785 Query 64789 AAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGGG 64848 ||||| ||| ||||||| || || | || ||||||||| |||| ||||| |||||||| Sbjct 3784 AAGCGAGGCTTGATGCCGGGCCTCACTTTCTCGAACGAGTTGATTTCTCGCGACGAGGGA 3725 Query 64849 CTCCACCAAGAATTTGCG 64866 || ||| ||| |||||| Sbjct 3724 CTGCACGCAGACTTTGCG 3707 >seq12278 Length=2500 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 80907 GGACGCCAGATTGCACACGGCCACCTCTTCA--GCATCTGTAAACTCGACGATTTCCGTG 80964 ||| |||| ||||| || |||||||| || || |||| |||||||| ||| ||| Sbjct 2048 GGAGGCCAAGTTGCAGACAGCCACCTCGTCTTTGCTCGTGTA--CTCGACGACTTCTGTG 2105 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 ||||| || | || || || |||| ||| |||||||| ||| ||||||||| Sbjct 2106 CACAAGTTGCTGCATTTGATAGTTCCCAAGTTCTTCTGGTTGCTCTTCCGATTGCAAGCG 2165 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAA 81084 || ||||| ||||||||| || || ||||||| || | || ||| || || |||| Sbjct 2166 TCTTTGTACAGCATGTACGGCGTGCCCGTCTCGATTTGCGCCTGGAGAATCGCAAACCAA 2225 Query 81085 A 81085 | Sbjct 2226 A 2226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570051193923200