Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq35672 141 8e-29 >seq35672 Length=222 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| ||| |||| || ||||| || || ||||| Sbjct 221 ATGCAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCA 162 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || ||| || || ||||| ||||| || || || ||||| Sbjct 161 GACACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAG 102 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| || ||||| ||| | || | || || |||||| Sbjct 101 CAGCGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAAC 42 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGT 27203 ||||| ||||||||||| | || ||||| |||||| Sbjct 41 ATTCAGAAGGAGTCGACTCTCCACTTGGTCTTGCGT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434720729587200