Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13]
36,360 sequences; 51,498,142 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq1218 158 3e-33
seq35672 143 6e-29
>seq1218
Length=18807
Score = 158 bits (174), Expect = 3e-33
Identities = 159/207 (77%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||||||||||||||| || |||| ||||| |||| | ||||| || || || |||||
Sbjct 15540 GTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTG 15481
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
||| || |||||||| || || || ||||| |||||||| || ||||| || || |||||
Sbjct 15480 CTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTT 15421
Query 225630 TTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689
||| ||| |||||||||||| || | || ||||| || |||||||||||||| ||
Sbjct 15420 GGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGT 15361
Query 225690 CAAAGTTTTTATGAACACTTGCATTTT 225716
| || || | ||| | ||||||||
Sbjct 15360 GAGCGTCTTCACGAAAATCTGCATTTT 15334
>seq35672
Length=222
Score = 143 bits (158), Expect = 6e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||| | || ||| | ||||||||| || || || || | ||||| || | || ||||
Sbjct 1 CGAAGACGCAAGACCAAGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTT 60
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || | |||||| ||||| || || || || || || || || |||||||||
Sbjct 61 CGGCCGTCCTCCAACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCT 120
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| ||||||||| ||||||| |||||||||||||| | || || || | |
Sbjct 121 TCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGC 180
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714
||||| ||||| || || | ||| || | || | ||||||
Sbjct 181 GTGATAGTCTTTCCGGTAAGAGTCTTCACAAAGATCTGCATT 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1191975644433840
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |