Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13]
36,360 sequences; 51,498,142 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq1218 131 4e-25
seq35672 104 5e-17
>seq1218
Length=18807
Score = 131 bits (144), Expect = 4e-25
Identities = 158/214 (74%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| || || || ||||||||||| |||| | ||||| || || || |
Sbjct 15543 CAAG-TGGAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGA 15485
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | ||||||||| | || ||||| ||||| || ||||
Sbjct 15484 GCTGCTTGCCTGCGAAGATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAA 15425
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || |||||| | || | | |||| ||| ||| || || | ||| || || ||||
Sbjct 15424 TCTTGGCCTTGACATTTTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGC 15365
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTTACC 152110
| ||||| ||||||||||| | ||||||||| ||
Sbjct 15364 CGGTGAGCGTCTTCACGAAAATCTGCATTTTGCC 15331
>seq35672
Length=222
Score = 104 bits (114), Expect = 5e-17
Identities = 149/209 (71%), Gaps = 1/209 (0%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || ||||| ||||| || || |||||||| || | | ||||| || || || |
Sbjct 15 CAAG-TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCA 73
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
|| || || || || || | |||||| || | | || |||||||| || || |
Sbjct 74 ACTGCTTGCCAGCAAAAATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGA 133
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| ||| || ||| |||| | | ||||||| ||| || ||||| || ||||| || |
Sbjct 134 TCTTTGCCTTCACATTCTCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTC 193
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| || ||||||||||| |||| |||||||
Sbjct 194 CGGTAAGAGTCTTCACAAAGATCTGCATT 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153283278157560
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |