Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1218 158 3e-33 seq35672 140 7e-28 >seq1218 Length=18807 Score = 158 bits (174), Expect = 3e-33 Identities = 152/195 (78%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| || |||||||||||||| | ||| || | ||| ||||| || || || || || || Sbjct 15528 TTCCTTCTGGATGTTGTAGTCGGAAAGGGTTCTGCCGTCCTCGAGCTGCTTGCCTGCGAA 15469 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||| ||| || |||||| |||||| |||||||| || || ||||| || || || | Sbjct 15468 GATCAGACGCTGCTGGTCAGGCGGAATTCCCTCCTTATCCTGAATCTTGGCCTTGACATT 15409 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| ||||| || | |||||||||||| || || | ||||| || Sbjct 15408 TTCGATGGTGTCAGAAGGCTCGACGTCCAAAGTGATCGTCTTGCCGGTGAGCGTCTTCAC 15349 Query 283088 GAATATCTGCATTTT 283102 ||| ||||||||||| Sbjct 15348 GAAAATCTGCATTTT 15334 >seq35672 Length=222 Score = 140 bits (154), Expect = 7e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||||| || || ||||| ||||| | || || || ||||| Sbjct 31 TCCTTCTGAATGTTGTAGTCAGACAGAGTTCGGCCGTCCTCCAACTGCTTGCCAGCAAAA 90 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| ||| || || ||| |||||||| |||||||| ||||||||||| || || | Sbjct 91 ATCAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGGATCTTTGCCTTCACATTC 150 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | || || || || ||||| ||||| || || | |||||| || Sbjct 151 TCGATGGTGTCTGACGGCTCAACATCAAGCGTGATAGTCTTTCCGGTAAGAGTCTTCACA 210 Query 283089 AATATCTGCATT 283100 || ||||||||| Sbjct 211 AAGATCTGCATT 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046251563459440