Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hammondia_20hammondi_20[genbank_20GCA_5F000447165.1_202013-08-13] 36,360 sequences; 51,498,142 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1218 147 5e-30 seq35672 109 1e-18 >seq1218 Length=18807 Score = 147 bits (162), Expect = 5e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | ||||||||||| || ||||| || || |||||||| | || || || Sbjct 15334 AAAATGC---AGATTTTCGTGAAGACGCTCACCGGCAAGACGATCACTTTGGACGTCGAG 15390 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || ||||||||||| || ||||| ||||||||||| || || ||||| || || Sbjct 15391 CCTTCTGACACCATCGAAAATGTCAAGGCCAAGATTCAGGATAAGGAGGGAATTCCGCCT 15450 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 |||||||| || || |||||||| || || |||||||| || || || || ||| |||| Sbjct 15451 GACCAGCAGCGTCTGATCTTCGCAGGCAAGCAGCTCGAGGACGGCAGAACCCTTTCCGAC 15510 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| |||| || ||||| || || || |||| Sbjct 15511 TACAACATCCAGAAGGAATCCACTCTCCA-CTTG 15543 >seq35672 Length=222 Score = 109 bits (120), Expect = 1e-18 Identities = 148/205 (72%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| ||||| || ||||| || ||||| || || || || |||||| Sbjct 218 CAGATCTTTGTGAAGACTCTTACCGGAAAGACTATCACGCTTGATGTTGAGCCGTCAGAC 159 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || |||||| |||||||| ||||| || || || || ||||| Sbjct 158 ACCATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGTATTCCCCCTGATCAGCAG 99 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || || || || || || ||| | || || || | ||||| | || || ||| | Sbjct 98 CGTCTGATTTTTGCTGGCAAGCAGTTGGAGGACGGCCGAACTCTGTCTGACTACAACATT 39 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 38 CAGAAGGAGTCGACTCTCCA-CTTG 15 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203170426773840