Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1353 154 2e-32 >seq1353 Length=60684 Score = 154 bits (170), Expect = 2e-32 Identities = 379/566 (67%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 16216 ATGTAGTCCTTCGTCTCTGCTGATA--AGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 ||||| |||||||||||| ||||| | ||| || ||||||||||| || |||||| Sbjct 30116 ATGTAATCCTTCGTCTCT--TGATATTAATTCATTTGAAAAAGTTAAACCAGGCATTAAA 30059 Query 16274 CCTCGTTTCTTTAACCAGAATAT--CGCAGCAAATGACCCCGAAAAGAATATACCCTCAA 16331 || ||| || | ||| || || ||||| || | | | ||| ||| || || |||| Sbjct 30058 GATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCACTGAA--GAAGATTCCTTCAA 30001 Query 16332 CAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCT 16391 || |||||| || | |||||| ||| | | ||| |||||| |||||||| Sbjct 30000 TAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTATTATTA---ATCCATTTTA 29944 Query 16392 GTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCT 16451 |||||| ||||||| ||||| | || || || ||||| | || Sbjct 29943 AAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAAGCTTTAAAAAGAAACT 29884 Query 16452 CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTA 16511 ||||||| | | ||| ||||||| ||||| || | |||| || |||| || || | Sbjct 29883 CTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAATAAGTTTCGGAATGAA 29824 Query 16512 TGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC-C 16570 | || || || ||||| | |||||||||||| || || || | |||| ||||| | Sbjct 29823 TATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCTGGAATTTAAACTTCAC 29764 Query 16571 ACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC 16630 || | |||| ||| || | || || || || || || || |||||||| || Sbjct 29763 ACAT-AAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAAGCTGCAAAAAATGCA 29705 Query 16631 AATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690 | | | |||||| || | | | ||| || || | | | ||||||||| |||||| Sbjct 29704 AGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCCCAATCTTTCAAATCT 29645 Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750 | | | ||| | ||| |||| |||||||| ||| | | | ||||| ||||||| | Sbjct 29644 TAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCTTTTTTGTACATTTCC 29585 Query 16751 CAAATATCATTGTATTGTA-TGGGAA 16775 || || | ||| |||| || |||||| Sbjct 29584 CATATTTTATTATATTTTATTGGGAA 29559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401505964440