Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq1257 149 5e-31 >seq1257 Length=94337 Score = 149 bits (164), Expect = 5e-31 Identities = 242/347 (70%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 101810 CCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACA 101869 ||||| ||||||||| |||||||| ||||| || | ||||| | | | | Sbjct 33748 CCTAATCCCATATCACATGATCTTTAATACATCATGCAACTTAAATTTCCTTTATTTATA 33807 Query 101870 TAAAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTC 101929 ||||||| || | ||||||||| || || || ||||| || | |||| |||||| Sbjct 33808 TAAAATTAGCTCATTACATGACATGGTGGTAAAGCCATTATACTTAAGTCTTTTACATTC 33867 Query 101930 CAAGCAC---ACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAAC 101986 |||||| | ||||| | | ||||| ||| ||| ||||||| |||||||| | Sbjct 33868 CAAGCATTTAATATTAATCTTCGACTATC---AGGATTTTTTTTTATTGTATCAATAAGT 33924 Query 101987 TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCCAACACCTTTATATTCTGCT 102046 | || ||||| || | ||||| ||||||||||| | || | || ||| | || Sbjct 33925 TCTTATAATTAATCTATTCCTTTACCTTTATAATCAGTCTTAAAATCTGCATACTAAGCA 33984 Query 102047 CCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAA 102106 || ||||||||||| | ||||||||| || ||||| | ||| || || || || | | | Sbjct 33985 CCAAAATGCCTCCATTAAAATCCATAAACTGGTCCTAAATCACCCTCTTCCCTATTGTGA 34044 Query 102107 AAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAAT 102153 ||||| | | ||||||||| ||||| ||| || ||||||| || Sbjct 34045 AAACCTAATGAATCTAAAAACTATCTACTTCCGTTTCCATCCCATAT 34091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361242319655267