Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq861 336 3e-87 seq1353 250 3e-61 >seq861 Length=133231 Score = 336 bits (372), Expect = 3e-87 Identities = 1161/1797 (65%), Gaps = 50/1797 (3%) Strand=Plus/Plus Query 52883 TAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 52942 |||||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 52943 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 53002 | | || ||| || || | | ||| ||| | || || || | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 53003 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 53059 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 53060 ATAGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 53119 | ||||||| || ||| | |||||| | | | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTA 47381 Query 53120 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 53179 ||||| || || ||||| |||||||| |||||| || | | |||||| | Sbjct 47382 ATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTT 47441 Query 53180 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 53239 || || | |||| ||||| ||||| | ||| ||| |||||| ||||||| || ||| Sbjct 47442 GTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTA 47501 Query 53240 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 53299 || ||||| |||||||| || | || | | |||||| | ||| ||| || |||||| Sbjct 47502 GAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTA 47561 Query 53300 TCTTTTAGAGGTTCCCAATT----CCAAAGATCCGACGGT-ACAACNNNNNNNNNNNNNN 53354 ||||| || ||||||| ||| | | || | | | || Sbjct 47562 CTTTTTAAAGAATCCCAATCATAACCACATTTATGAGGTTTATAATTCCATAAATCAAAC 47621 Query 53355 NTTGTAGAAT--ACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTT 53412 || ||| ||| | | || || |||||| | | | || ||| || || Sbjct 47622 ----TACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTT 47677 Query 53413 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 53472 ||| | ||| || || | || || |||||||| ||||| ||||| || | Sbjct 47678 TATAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTC 47737 Query 53473 ATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTG 53531 ||| | ||| |||| || || || | | | |||||| || || || || | Sbjct 47738 ATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAG 47796 Query 53532 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 53591 | | ||||| |||||| || || |||||||||||| || |||| || | | || | | Sbjct 47797 CAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAG 47856 Query 53592 GAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGA 53648 ||| ||||| ||||| ||| |||| | | || | ||| |||| ||| ||||| Sbjct 47857 GAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATT--TTTGA 47914 Query 53649 CCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCT--ATTA----------CAAACA 53696 | || | || ||| | | || || | | || | |||| |||| Sbjct 47915 T-ATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAAATT 47973 Query 53697 TGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 53756 | | || | |||||| |||| |||||| || || | |||| | | ||||| | Sbjct 47974 TTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAA 48033 Query 53757 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 53816 | || ||||| || | ||| || | || || || ||||||| || |||||| ||| Sbjct 48034 TAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTC 48093 Query 53817 TGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAA 53876 | ||||| ||||| ||||| | || | || || |||||||| || | || || |||| Sbjct 48094 TATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAA 48153 Query 53877 TCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTA 53934 | ||| ||| | | | || || ||| | ||| | || || ||||||||| || Sbjct 48154 TATCTTGCCAAAGTTCTCTGGCTTTAATTCTT--TTTCTTCCTTTTCCTTCTCTTTCATA 48211 Query 53935 TAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 53994 | || | | |||||| || ||||||||||||| || || |||||||| Sbjct 48212 TTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATT 48271 Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054 || |||||||| | ||| | | | || | | |||| | ||||||| | ||||||||| Sbjct 48272 AGGGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAAT 48331 Query 54055 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 54113 ||| | || ||| || |||||||| | ||| || || || ||||| ||| ||||| | Sbjct 48332 CCATAACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTA 48390 Query 54114 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAG 54173 | | || | | || ||||| |||||| |||||||| ||||| | | ||| Sbjct 48391 ATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTT 48450 Query 54174 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 54233 | |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| | Sbjct 48451 TTCTTTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCG 48510 Query 54234 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 54293 ||||||| ||||| || ||||| || || ||||| || | | | |||| Sbjct 48511 GAATAATTCCATTAGAATGTCCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATAT 48570 Query 54294 TACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 54353 || || ||| | |||||| || || || | ||||| ||||| || ||| ||| || | Sbjct 48571 TATGAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATG 48630 Query 54354 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 54413 ||||||| ||||| || || |||| | ||| | | || ||||| ||| ||| | Sbjct 48631 TATCATATATGCCTTCAATTGAATCACTCTACATAGTCAATAAGAAACAACTACTCATCT 48690 Query 54414 ---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 54470 ||| | || ||| || |||||||| ||||||| || || || |||||||||| Sbjct 48691 AAGGGTTTGG---AGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTT 48747 Query 54471 CAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATA--TCCCATTGATGAATTCCTAC 54528 || | || |||||| || || || | | |||| || | || || || |||| Sbjct 48748 CACTCATTAAATTGTAAGTTCTGAATGC--ACTTTATAAGTCTCTTTTGTGGATACCTAT 48805 Query 54529 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAA 54588 | || | ||||||||| | |||||||| || || || || ||||| | | Sbjct 48806 GGAAACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAG 48865 Query 54589 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || ||| |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48866 ATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 250 bits (276), Expect = 3e-61 Identities = 506/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 24008 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 24067 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 24068 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-CTCGGTGGATACA-ATAAATGTTTA 24125 || || | |||||| | ||| ||||| | || | | | || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 || |||||| || ||||| |||| || |||||||| |||||||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 24244 || || | || ||||||| | |||||||||||||| |||| |||| || ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCC 30021 Query 24245 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT 24304 | ||||| |||||||| | || ||||| |||| | || | || | | | Sbjct 30020 ACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATT 29961 Query 24305 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 24364 | || ||||| ||| |||||| | || || || |||| ||| || | Sbjct 29960 ATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA 29901 Query 24365 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 24424 ||| ||||| ||| | | |||||||||| |||||| | ||| ||||| || || | | Sbjct 29900 AGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGA 29841 Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 ||| |||| |||||||| ||||| || || |||| |||||| |||||| ||| || || Sbjct 29840 ATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTC 29781 Query 24485 GGTAATCTGTACTTCTATACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 | ||| | ||||| | ||| |||| ||| ||||||||||| || ||||| || Sbjct 29780 TGGAATTTAAACTTC-ACACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTG 29722 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603 ||||||||||| || | |||| || ||||| | | | ||| | || | | | | Sbjct 29721 AAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTT 29662 Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663 |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | Sbjct 29661 CCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTT 29602 Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 24723 | ||||| ||||| | ||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 29601 CTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTG 29542 Query 24724 GATTTTTTGCAAGGATTGGTTC 24745 |||||| | ||| |||||||| Sbjct 29541 GATTTTCTTAAAGAATTGGTTC 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706630794160