Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1181 102 7e-17 seq1314 100 2e-16 >seq1181 Length=100449 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 ||||||| |||| ||| |||||||||| || || ||||| || || || || | Sbjct 75137 AAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGC 75078 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || | | | || |||| |||||| || |||||||| | || ||| Sbjct 75077 ATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGA 75018 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 | || |||||||||| ||||| || ||| || |||||||| || |||| | | ||||| Sbjct 75017 TTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTA 74958 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||| | || ||||| ||||| || | || || ||||| ||||||| Sbjct 74957 CAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq1314 Length=139336 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||| |||| ||| | ||||| || || || ||||||||||| || ||| | Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || | | | || | ||| ||||||| || || ||||| | || |||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||||| || || || ||| || | ||||| || |||| | | |||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||| | |||||||| ||||| || |||| || ||||| ||||||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGG 38379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325470564135