Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1257 109 4e-19 >seq1257 Length=94337 Score = 109 bits (120), Expect = 4e-19 Identities = 233/347 (67%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 97174 CCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACA 97233 |||| |||||||||| |||||||| ||| | | || | ||||| | | | | Sbjct 33748 CCTAATCCCATATCACATGATCTTTAATACATCATGCAACTTAAATTTCCTTTATTTATA 33807 Query 97234 TAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTC 97293 ||||| | |||| ||||||||| || || || |||||| | | ||| |||||| Sbjct 33808 TAAAATTAGCTCATTACATGACATGGTGGTAAAGCCATTATACTTAAGTCTTTTACATTC 33867 Query 97294 CAAGCAC---ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 |||||| | || || ||| ||||| | | ||| | | ||| |||| ||| | Sbjct 33868 CAAGCATTTAATATTAATCTTCGACTATCAG---GATTTTTTTTTATTGTATCAATAAGT 33924 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | | ||||| ||| | |||| || ||||| ||||| | || ||| | || Sbjct 33925 TCTTATAATTAATCTATTCCTTTACCTTTATAATCAGTCTTAAAATCTGCATACTAAGCA 33984 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 |||||||||||||||| ||||||||||| ||||| | || || ||||| |||| Sbjct 33985 CCAAAATGCCTCCATTAAAATCCATAAACTGGTCCTAAATCACCCTCTTCCCTATTGTGA 34044 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAAT 97517 ||||| | ||||||| | | ||| ||| ||| ||||||| || Sbjct 34045 AAACCTAATGAATCTAAAAACTATCTACTTCCGTTTCCATCCCATAT 34091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346775475290690