Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1257 159 5e-34 seq1314 138 2e-27 seq892 136 6e-27 >seq1257 Length=94337 Score = 159 bits (176), Expect = 5e-34 Identities = 289/415 (70%), Gaps = 11/415 (3%) Strand=Plus/Plus Query 205500 ACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATA--TTTATTATTA 205557 |||||| ||||||||| |||||||| |||||| |||| || || ||| | ||| Sbjct 33747 ACCTAATCCCATATCACATGATCTTTAATACAT----CATGCAACTTAAATTTCCT-TTA 33801 Query 205558 ATTACATGAAATT-GTACAAAACAATGACAAGGTGGTATAACCAT-ATTTTCAACATCTA 205615 ||| || ||||| | || ||| ||||| ||||||| | |||| || | || ||| Sbjct 33802 TTTATATAAAATTAGCTCATTACA-TGACATGGTGGTAAAGCCATTATACTTAAG-TCTT 33859 Query 205616 TAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattta 205675 | |||||| || ||||||||| ||| | ||||| || ||||||||| ||| | Sbjct 33860 TTACATTCCAAGCATTTAATATTAATCTTCGACTATCAGGATTTTTTTTTATTGTATCAA 33919 Query 205676 tAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATT 205735 ||| | | ||||| ||| | ||||| | | |||||| || | | ||| ||| | Sbjct 33920 TAAGTTCTTATAATTAATCTATTCCTTTACCTTTATAATCAGTCTTAAAATCTGCATACT 33979 Query 205736 TAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTAT 205795 |||||||||||| | ||||| ||| ||||||||||| ||||||||||| |||| |||| Sbjct 33980 AAGCACCAAAATGCCTCCATTAAAATCCATAAACTGGTCCTAAATCACCCTCTTCCCTAT 34039 Query 205796 CATTAAAACCACGtttttttatatattttaatgatccattttcatcccaaatatggattc 205855 | |||||| | | || | | | | ||| ||| ||||||| || | || | Sbjct 34040 TGTGAAAACCTAATGAATCTAAAAACTATCTACTTCCGTTTCCATCCCATATTTTAATCC 34099 Query 205856 ctttattttttaGAATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTC 205910 |||||| ||| | || ||||||| ||||| ||||||||| | ||| || Sbjct 34100 CTTTATCACTTAATAATTTACTATTAGTGGATCCTTTTATAAACCAAATTAACTC 34154 >seq1314 Length=139336 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || || ||||||| ||||| || ||| |||| ||||||| Sbjct 38606 AATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCTTC 38547 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||| ||||| ||| |||| |||||| |||| || ||||| || ||||| ||| | Sbjct 38546 TGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGATTA 38487 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| |||||||| || || ||| ||||||| || | |||| | ||||| || Sbjct 38486 ATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTACAA 38427 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||| |||| ||||| ||| | ||||||||||| | ||| |||| ||| Sbjct 38426 TATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGGT 38378 >seq892 Length=79579 Score = 136 bits (150), Expect = 6e-27 Identities = 179/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| || | || ||| |||| || ||||| || ||| |||| ||||||| Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| ||| | ||| ||||| |||||||||||||||| || || ||| || Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| ||||| || ||||||||| ||||||| || | |||| | || || ||| Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||| ||||||||||||| | ||||| || || | ||| |||||||||| |||| ||| Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTTC 46884 Query 124778 ATAAAAA 124784 | |||| Sbjct 46883 GTCAAAA 46877 Score = 131 bits (144), Expect = 3e-25 Identities = 178/247 (72%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| || | || ||| |||| || ||||| || ||| |||| ||||||| Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | ||| ||||| |||||||||||||||| || || ||| || Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| ||||| || ||||||||| ||||||| || | |||| | || || ||| Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATTC 124777 ||| ||||||||||||| | ||||| || || | ||| |||||||||| |||| ||| Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTTC 47112 Query 124778 ATAAAAA 124784 | |||| Sbjct 47111 GTCAAAA 47105 Score = 129 bits (142), Expect = 9e-25 Identities = 178/248 (72%), Gaps = 1/248 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||| |||| || | || ||| |||| || ||||| || ||| |||| ||||||| Sbjct 47580 AATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTC 47521 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| || | ||| ||||| |||| ||||||||||| || || ||| | Sbjct 47520 CGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTA 47461 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 | |||| ||||| || ||||||||| ||||||| || | |||| | || || || Sbjct 47460 ATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAA 47401 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 |||| ||||||||||||| | ||||| || || | ||| |||||||||| |||| || Sbjct 47400 TATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGGTATGTAAATCTT 47341 Query 124777 CATAAAAA 124784 | | |||| Sbjct 47340 CGTTAAAA 47333 Score = 109 bits (120), Expect = 8e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||| |||| || | || ||| |||| || ||||| || ||| |||| ||||||| Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || | ||| || | ||| ||||| |||| ||||||||||| || || ||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 |||| ||||| || ||||||||| ||||||| || | |||| | || || ||| Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTA 124751 ||| ||||||||||||| | ||||| || ||| Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTA 46683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755436953065600