Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1181 140 5e-28 seq1038 129 9e-25 seq1314 122 1e-22 seq892 118 2e-21 seq939 111 2e-19 >seq1181 Length=100449 Score = 140 bits (154), Expect = 5e-28 Identities = 166/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || || ||||| | ||| |||||||| | ||||| ||||||||| Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| ||| || |||| |||||| ||||| || | ||||| | ||| |||||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||| |||| | ||| || || || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| |||||||||||||||||||||||||| | ||| |||| |||||| || Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTTT 75139 >seq1038 Length=46086 Score = 129 bits (142), Expect = 9e-25 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| ||||| | |||||| || ||||| | ||| || || || | ||||| |||||||| Sbjct 44070 TCCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGA 44011 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||| ||||| | ||| ||||||| |||||| || ||||| ||||||| | ||| ||||| Sbjct 44010 AAGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGG 43951 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| ||||| ||||||| | ||| ||| |||||| Sbjct 43950 AATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTAC 43891 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| ||| || ||||| || ||||| ||||||| || |||| |||||| || Sbjct 43890 GTCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTT 43837 >seq1314 Length=139336 Score = 122 bits (134), Expect = 1e-22 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||| || |||||||| | ||| ||||| || | ||||| ||||| ||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || ||||||| ||| ||||| ||||| | ||||| | ||| || ||| Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 |||||||| || |||| | ||| ||| ||| || Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATT 146283 |||| || || ||||| |||||||| ||||||| ||| |||| |||||| || Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTTCTT 38611 >seq892 Length=79579 Score = 118 bits (130), Expect = 2e-21 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 ||| |||||||||||||| || ||||| | || |||||||| | ||||| || || || Sbjct 46668 TCCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGA 46727 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||| | || ||||||| |||||| || || || | ||||| | ||| || || Sbjct 46728 AAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGG 46787 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 ||| |||||||| |||| || || ||| ||| || Sbjct 46788 AATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAAC 46847 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||||||||| || ||||||||||| | ||| |||| ||| Sbjct 46848 ATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Score = 116 bits (128), Expect = 6e-21 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || ||||| | || |||||||| | ||||| || || ||| Sbjct 47125 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47184 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || ||||||| |||||| || || || | ||||| | ||| || ||| Sbjct 47185 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47244 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||||||||||| || || ||| ||| || Sbjct 47245 ATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47304 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||||||||| || ||||||||||||| ||| |||| ||| Sbjct 47305 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Score = 114 bits (126), Expect = 2e-20 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || ||||| | || |||||||| | ||||| || || ||| Sbjct 47353 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47412 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || ||||||| |||||| || || || | ||||| | ||| || ||| Sbjct 47413 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47472 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || |||||||| |||| || || ||| ||| || Sbjct 47473 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47532 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT--TTTATT 146283 |||| ||||||||||| || ||||||||||||| ||| |||| ||| |||||| Sbjct 47533 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATT 47587 Score = 111 bits (122), Expect = 2e-19 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || ||||| | || |||||||| | ||||| || || ||| Sbjct 46897 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 46956 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | || ||||||| |||||| || || || | ||||| | ||| || ||| Sbjct 46957 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47016 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || ||||||||||||| || || ||| ||| || Sbjct 47017 ATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACA 47076 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| ||||||||||| || ||||||||||| | ||| |||| ||| Sbjct 47077 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 >seq939 Length=68161 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 10454 AGCTCCCAGATCTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGA 10513 ||| || ||||| | | ||||| || || ||||||||| | |||||||| || || || Sbjct 31741 AGCACCAAGATCAGGTCTAGCTTGGAAGAATTTTATTGATGTAGGAGCTGGTGTTATAGA 31800 Query 10514 CGAAGATTATAGAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTA 10572 |||||||||||||||| | || ||| |||||||||||||||||||||| ||||||| Sbjct 31801 CGAAGATTATAGAGGAGAAGTAAATGTATTATTATTTAATCATTCTAATGATGATTTTA 31859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743507653840640