Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1353 260 1e-64 >seq1353 Length=60684 Score = 260 bits (288), Expect = 1e-64 Identities = 475/685 (69%), Gaps = 13/685 (2%) Strand=Plus/Minus Query 16109 TTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACC 16168 ||||| || ||||||| |||||| | ||||| | | ||| | |||||| || | ||| Sbjct 30256 TTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAACA 30197 Query 16169 GCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGG--TTTA-ATAAGTGTTTA 16225 |||||| ||| ||| | | ||| | | |||| | | |||| || | || || Sbjct 30196 GCTTCAGCGATAATAACATTAACTTCT-TCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 16226 AACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAA 16285 || | |||||||||||| ||| ||||||||||| || |||||| || |||||| Sbjct 30137 AAGC--AAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || | ||| ||||||| || |||||||| |||||| || ||| || ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCA 30020 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||| || ||||||| || ||||||||||| ||||| | || | | ||| Sbjct 30019 CTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTA 29960 Query 16406 ttactttctatccattttttagcccaatttgctttttg-tttAACACAGTTCATGTTCTC 16464 ||| | ||||||||| |||||| | ||||||| |||| |||| || || Sbjct 29959 TTATTA---ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGA-ATATTTAG 29904 Query 16465 TATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAA 16524 || ||||| | | | | |||||| || |||| |||||||||||||||| ||| Sbjct 29903 ACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAA 29844 Query 16525 ACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAG 16583 | ||| |||| ||||||||||| ||||| ||||| | ||| ||||| ||||| ||| | Sbjct 29843 AGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGC-TCTTG 29785 Query 16584 CTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCAT 16643 |||| | |||| |||||| | ||| ||| ||||| ||||| ||| ||||||| Sbjct 29784 CTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCAT 29725 Query 16644 CGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTT 16703 | |||||||||||| ||||| | | |||||||| | | | ||| ||| | | | Sbjct 29724 CTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATC 29665 Query 16704 TTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAA 16763 || ||| || ||||||| | | ||| | || ||| | |||||||| ||||| | Sbjct 29664 TTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGA 29605 Query 16764 CAGCCTTTTTATACATTTTCCATAT 16788 | ||||| ||||||| |||||| Sbjct 29604 GTTCTTTTTTGTACATTTCCCATAT 29580 Score = 116 bits (128), Expect = 3e-21 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 15908 AACACATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTT 15967 || || ||||||| |||| ||||||||| ||||| |||||||| |||||||||| Sbjct 30512 AAAACTTTATCTTCTTTAGAAGACATAACTCCTGATTTTTAATATTCACCAACTCTCTTT 30453 Query 15968 TCAAAGAAATTTGTTTTTCCTTCTAATGAAATAT--TTTCCATAAAATCAAAAGGATTTT 16025 ||||||||||| ||||||||| ||| | |||| | ||||| | |||||||| |||| Sbjct 30452 TCAAAGAAATTAGTTTTTCCT--TAAATACATATCATATCCATCCACTCAAAAGGGTTTT 30395 Query 16026 TTGAACAATAGTATTTATCGCATCCCAATTCCA-ACAATAATCTATCCGCCACAAATTCT 16084 ||||| | | || || | | |||| | |||| | |||||| || ||||||||| Sbjct 30394 TTGAATTA-AATAATTTTGGATAACCAAGAGAATACAAAAGTCTATCTGCAACAAATTCT 30336 Query 16085 ATATACTGTTTCAT 16098 | ||| | |||||| Sbjct 30335 AAATATTCTTTCAT 30322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500338916200