Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1353 221 1e-52 >seq1353 Length=60684 Score = 221 bits (244), Expect = 1e-52 Identities = 440/645 (68%), Gaps = 15/645 (2%) Strand=Plus/Minus Query 14180 TATTTTAGATGTTTAA--AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 14237 ||||||| || || | ||| ||||| |||||||| ||| | || || ||||| Sbjct 30156 TATTTTACATCATTGAGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTG 30097 Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 || | ||| |||||||| ||||| || ||||| || || |||||| | |||||| | Sbjct 30096 ATATTAATTCATTTGAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAA 30037 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTT 14357 | || ||| ||| ||||| ||||| |||| || ||||| || | |||||| Sbjct 30036 TGGCGCAGAAACTTCCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAG 29977 Query 14358 CTCCAAACGA---TG-CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt 14413 || ||| || | || || || ||||||||| |||||||| || |||||| Sbjct 29976 ----AAGCGAAATTGTCATTATTATTA---ATCCATTTTAAAGCCCATTAAGCTTTTTTA 29924 Query 14414 ttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAA 14473 || || | | || || | ||| ||||| | | || || || ||| | | Sbjct 29923 TTTATTACAGGAATATTTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTT 29864 Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || ||||| || | ||| ||| |||| || || || |||||||||||||| | | Sbjct 29863 ATATAAGTATCTATTAATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAA 29804 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAA 14593 || ||||| ||| ||| ||||||| || || || | |||| ||| || ||| Sbjct 29803 AATCCATAGAAAGCTCTTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAA 29744 Query 14594 TTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTAT 14653 ||||| ||| || ||||| ||||||||||||||| | | | |||||||||| | Sbjct 29743 TTTTCTAGAACAATTCCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGT 29684 Query 14654 TGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCA 14713 ||| ||| | | | ||| |||||| ||||| | | ||||||| | ||| || Sbjct 29683 CTCTCGCCATCAGTCAATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCT 29624 Query 14714 ACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATA 14773 |||||||||| ||| | ||||||| |||||| ||||||||| |||||| ||| Sbjct 29623 GCTGTCCAAAATGAAGCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATT 29564 Query 14774 GGAAAAACTACAAATCT-TGAAGATGTTTCTTTAAGAATTGGTTC 14817 || || | |||||||| | ||| |||||| |||||||||||| Sbjct 29563 GGGAACATAACAAATCTGTTTGGAT-TTTCTTAAAGAATTGGTTC 29520 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||||||| ||| ||| ||||| ||||| ||||| ||| ||||| || ||||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACTTTATCTTCTTTAGAAGACATAACTCCTGATTTTT 30473 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 |||||||| |||||| ||||||||||| |||||||| |||| | |||| | |||| Sbjct 30472 AATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATCCA 30413 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA-- 14034 | | ||||| || ||| |||| |||| | ||| | |||| || |||| || Sbjct 30412 TCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAAG--AGAATACAAAAG 30355 Query 14035 TCTATCCGCAATGAACTCAATATATT 14060 |||||| |||| || || | ||||| Sbjct 30354 TCTATCTGCAACAAATTCTAAATATT 30329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482333438861560