Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq892 91.5 1e-13 >seq892 Length=79579 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | ||||| | || | || |||||||||||||||| ||| |||||||| | Sbjct 46668 TCCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGA 46727 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | ||||| |||| ||| || || |||||||||||| || ||| ||| Sbjct 46728 AAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGG 46787 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | ||||| || || |||| | || ||||| | | ||| || ||| | || Sbjct 46788 AATACCTTCTTTGTCTTAGATTT-TAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAA 46846 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | ||||| |||| ||||| |||||||| || || |||| ||| Sbjct 46847 CATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||||| ||| |||||||| | | ||| | | ||||| |||| | Sbjct 46921 TGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTAT 46980 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||||||||||| || ||| ||| | ||||| ||||| |||| | Sbjct 46981 TTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTATCTTAGATTT-T 47039 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | | ||| || ||| | || || | ||||| |||| ||||| Sbjct 47040 AGCTTTGACATTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGT 47099 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || |||| ||| Sbjct 47100 TAATGTTTTGACGAAGATTTACAT 47123 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||||| ||| |||||||| | | ||| | | ||||| |||| | Sbjct 47149 TGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTAT 47208 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||||||||||| || ||| ||| | ||||| ||||| |||| | Sbjct 47209 TTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTATCTTAGATTT-T 47267 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | | ||| || ||| | || || | ||||| |||| ||||| Sbjct 47268 AGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGT 47327 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 |||||||| || || |||| ||| Sbjct 47328 TAATGTTTTAACGAAGATTTACAT 47351 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || ||||||||||||| ||| |||||||| | | ||| | | ||||| |||| | Sbjct 47377 TGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTAT 47436 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || |||||||||||| || ||| ||| | ||||| || || |||| | Sbjct 47437 TTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTGTCTTAGATTT-T 47495 Query 18243 TGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 || ||||| | | ||| || ||| | || || | ||||| |||| ||||| Sbjct 47496 AGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGT 47555 Query 18302 CAATGTTTTTACAAAAATTTGCATTTTT 18329 |||||||| || || |||| |||| || Sbjct 47556 TAATGTTTTAACGAAGATTTACATTATT 47583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334674894665