Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1353 107 2e-18 >seq1353 Length=60684 Score = 107 bits (118), Expect = 2e-18 Identities = 231/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 ||||||| || | |||| ||||| |||||||| ||||| || || ||||| | Sbjct 29519 TGAACCAATTCTTTAAGAAAATCCAAACAGATTTGTTATGTTCCCAATAAAATATAATAA 29578 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || ||| | ||||||||||| | | || || |||||||| | || ||| | || || Sbjct 29579 AATATGGGAAATGTACAAAAAAGAACTCGCTTCATTTTGGACAGCAGACGAAATTGATCT 29638 Query 57629 GTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACA 57688 | | | ||| ||| |||||||| | | || |||||| | |||||||| | Sbjct 29639 TTATTAAGATTTGAAAGATTGGGAAAGATTGACTGATGGCGAGAGACACTTTATTAAGTA 29698 Query 57689 CGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATT 57748 || | || ||||| || || || ||||| |||||| || ||||| | ||| ||| Sbjct 29699 TGTTCTTGCATTTTTTGCAGCTTCAGATGGAATTGTTCTAGAAAATTTAGCTGAATAATT 29758 Query 57749 TTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTT-TACGGATTTCAAGTGGCCATTG 57807 | ||||| || | | || || ||| ||||| || |||||| || | || || | Sbjct 29759 TATGTGTGAAGTTTAAATTCCAGAAGCAAGA-GCTTTCTATGGATTTTAAATAGCTATGG 29817 Query 57808 AAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTA 57850 |||| | ||||| |||| ||||| || | || ||||| || Sbjct 29818 AAAATATTCATTCCGAAACTTATTCTTTATTAATAGATACTTA 29860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445755161114640