Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq861 347 2e-90 seq1353 242 5e-59 >seq861 Length=133231 Score = 347 bits (384), Expect = 2e-90 Identities = 1166/1792 (65%), Gaps = 40/1792 (2%) Strand=Plus/Plus Query 62121 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 62180 |||||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 62181 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCA 62240 | | || ||| || || | | ||| ||| | || || || | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 62241 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 62297 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 62298 ATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62357 | |||||| || ||| | |||||| | | | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTA 47381 Query 62358 GTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGA 62417 ||||| || || ||||| || ||||| ||||| || | | |||||| | Sbjct 47382 ATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTT 47441 Query 62418 GTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTT 62477 || || | |||| ||||| ||||| | || ||| |||||| ||||||| || ||| Sbjct 47442 GTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTA 47501 Query 62478 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 62537 || ||||| |||||||| || | || | | |||||| | ||| ||| || |||||| Sbjct 47502 GAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTA 47561 Query 62538 TCTTTTAGATGTTCCCAATT----CCAAAGATCCGACGGTACAACANNNNNNNNNNNATA 62593 ||||| | ||||||| ||| | | || ||| | | | | Sbjct 47562 CTTTTTAAAGAATCCCAATCATAACCACATTTATGA-GGTTTATAATTCCATAAATCAAA 47620 Query 62594 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTC 62653 | | |||| | | || || |||||| | | |||| ||| || || Sbjct 47621 CTACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTTTAT 47680 Query 62654 AGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATT 62713 ||| | || || || | || || |||||||| ||||||||||| || | ||| Sbjct 47681 AGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTCATT 47740 Query 62714 TAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCGCTA 62772 | ||| |||| || || || | | | |||||| || || || || || | Sbjct 47741 GATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCAA 47799 Query 62773 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 62832 ||||| |||||| || || |||||||||||| || |||| || | | || | |||| Sbjct 47800 GTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAGGAA 47859 Query 62833 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCA 62889 ||||| ||||| ||| |||| | | || | || |||| ||| ||||| | Sbjct 47860 CTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATT--TTTGAT-A 47916 Query 62890 CATCCTTCAGTTTGA-------GAAA-ATCAAATCGCCC-ATCTATTACAA-ACATGTTC 62939 || | || ||| |||| || || | | |||| |||| | || || Sbjct 47917 TTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAAATTTTT 47976 Query 62940 A--ATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTA 62997 | | | || ||| |||| |||||| || || | |||| | | ||||| || | Sbjct 47977 ATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAATAA 48036 Query 62998 TCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGT 63057 | ||||| || | ||| || | ||||| || ||||||| || |||||| ||| | | Sbjct 48037 TTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTCTAT 48096 Query 63058 TACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCG 63117 |||| ||||| ||||| | || | ||||| |||||||| || | ||| || ||||| Sbjct 48097 TACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAATAT 48156 Query 63118 CTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 ||| ||| | ||| || || ||| | | | | | | ||||||||| ||| Sbjct 48157 CTTGCCAAAGTTCTCTGGCTTTAATTCTTTTTCTTCCTTTTCCTTCTCTTTCATATTTCT 48216 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATT-GTCCAATCTAGGACATTCATCCGGA 63236 || | | ||| || || ||||||||||||| | || ||| |||||||| || Sbjct 48217 CGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAA-ACATTCATTAGGG 48275 Query 63237 CACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 63296 |||||||| | ||| | | | || | | |||| | ||||||| | |||||||||||| Sbjct 48276 CACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCCAT 48335 Query 63297 AGAGCTATA-AATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 | || ||| || |||||||||| ||| || || || ||||| ||| ||||| | | Sbjct 48336 AACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTA 48394 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | || | | || ||||| |||||| |||||||| ||||| || | ||| | Sbjct 48395 TAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTTCT 48454 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| ||||| Sbjct 48455 TTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAAT 48514 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACT 63535 ||| || || || ||||| || || ||||| | | | | |||||| Sbjct 48515 AATTCCATTAGAATGTCCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTATG 48574 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 || ||| | ||||||||| || || | ||||| ||||| || ||| ||| || || || Sbjct 48575 AACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTATC 48634 Query 63596 ATAGATGCCTTCTATGCTATCA-TCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGT 63654 ||| |||||||| || |||| || | ||| | | || ||||| ||| ||| | Sbjct 48635 ATATATGCCTTCAATTGAATCACTCTA-CATAGTCAATAAGAAACAACTACTCATCTAAG 48693 Query 63655 GACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAA 63714 | | || ||| || |||||||| ||||||| || || || |||||||||||| | Sbjct 48694 GGTTTGGAGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTCACTCA 48753 Query 63715 GTAGATTGTACG-TCTCAATAGCTGAGTCTATA--TCCCATTGATGAATTCCTACTGCGA 63771 || |||||| | ||| ||| || | | |||| || | || || || |||| | | Sbjct 48754 TTAAATTGTAAGTTCTGAAT-GC--ACTTTATAAGTCTCTTTTGTGGATACCTATGGAAA 48810 Query 63772 CACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGG 63831 | | ||||||||| | |||||||| |||||||| || ||||| || | || | Sbjct 48811 CTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAGATAAG 48870 Query 63832 ATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63883 || |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48871 ATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 242 bits (268), Expect = 5e-59 Identities = 502/741 (68%), Gaps = 6/741 (1%) Strand=Plus/Minus Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCA-CTCGGTGGATGTA-ATAAATGTTTA 33572 || | | ||||||| |||| ||||| | || | | || || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 || |||||| || ||||| || | || |||||||| |||||||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | || ||||||| | |||||||||||||| |||| ||| ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCA 30020 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 |||||||||||||| | || ||||| |||| | || | || | | | Sbjct 30019 CTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTA 29960 Query 33753 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33812 | || ||||| ||| |||||| | || || || |||| ||| || || Sbjct 29959 TTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAA 29900 Query 33813 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33872 || ||||| ||| | | |||||||||| |||||| | ||||||||| || || | | | Sbjct 29899 GCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAA 29840 Query 33873 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33932 || |||| |||||||| ||||| || || || | |||||| |||||| ||| || || Sbjct 29839 TAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCT 29780 Query 33933 GTAATCTGCACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 | ||| | ||||| ||| |||| ||| ||||||||||| || |||||||| Sbjct 29779 GGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGA 29721 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 34051 ||||||||||| || | |||| || ||||| | | | ||| | || | | | | Sbjct 29720 AGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTC 29661 Query 34052 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 34111 |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | | Sbjct 29660 CCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTC 29601 Query 34112 CTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGG 34171 ||||| ||||| | ||| || | || ||||| |||||||| ||||||||||| ||||| Sbjct 29600 TTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTGG 29541 Query 34172 ATTTGGTGCAAGGATAGGTTC 34192 |||| | ||| || ||||| Sbjct 29540 ATTTTCTTAAAGAATTGGTTC 29520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/220 (71%), Gaps = 15/220 (7%) Strand=Plus/Minus Query 33238 AAAAGTCAACATCTAAA--GAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 33292 |||| ||| ||| ||| ||||| | || ||||||| ||| ||||||||| ||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACT--TTATCTTCTTTAGAAGACATAACTCCTGATTT 30475 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || |||||||| || | ||||| || |||||||||||||||| | |||| | || Sbjct 30474 TTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATC 30415 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT-CCCAATTCAGAAATCA 33411 ||| | ||||| || || | || ||||| |||| || |||| |||| || Sbjct 30414 CATCCACTCAAAAGGGTTTTTTGAAT--TAAATAATTTTGGATAACCAA--GAGAATACA 30359 Query 33412 A---TCTATCTGCGACGAATTCTATATATGTTTTCATCAT 33448 | ||||||||| || ||||||| |||| ||||||||| Sbjct 30358 AAAGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629801720723760