Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq861 405 5e-108 seq1353 275 6e-69 >seq861 Length=133231 Score = 405 bits (448), Expect = 5e-108 Identities = 1148/1739 (66%), Gaps = 50/1739 (3%) Strand=Plus/Plus Query 36982 TTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCTAAA 37041 ||||| || | |||||||| |||||||| || | || | | | || || | ||| | Sbjct 47253 TTTTGTGAAACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTAT 47312 Query 37042 ---TGTTGAATAGAACCATTATGTAACACAATTGT--ATTCTTTATGTCATTATTCCACA 37096 | || || ||| ||||||| || || | || |||||| | | | |||| Sbjct 47313 ATTTATTAAACAGATCCATTAT--AAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATT 47370 Query 37097 TATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATA 37156 |||| | | |||| ||| | || || ||||| ||| ||| || || | | Sbjct 47371 GATTTATTTTAATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGA 47430 Query 37157 ATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATA 37216 ||||||||||||||||| ||| |||||| ||||||| || ||| ||| | ||| | Sbjct 47431 GTACTCTTCTTGTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAA 47490 Query 37217 TTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTG 37276 ||| ||| ||||| ||||| ||||| || ||||||| ||| |||||||| |||| | Sbjct 47491 TTTAAGAAGTAGAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATT 47550 Query 37277 TATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAA----ATCTGTTGGGTTCTTTAA- 37331 | | ||| | |||||| || |||||| |||| || | | |||| | ||| Sbjct 47551 TTTATATTTTACTTTTTAAAGAATCCCAATC--ATAACCACATTTATGAGGTT-TATAAT 47607 Query 37332 -CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAG 37390 ||| | |||| | | | |||| | | || || || | | | | ||||| Sbjct 47608 TCCATAAATCAAACTACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAAC 47667 Query 37391 GTCCGTAAATTTTAGCTAGTTCGCAACTA-GATTCTAGTGCGGCATAATATATTGTTTCG 37449 ||| | || |||| | ||| || | | ||| || ||||||| || ||||| Sbjct 47668 ATCCATCTTTTATAGCCAATTC-CATGGATGCTTCACAAGCTCCATAATAAATAGTTTCA 47726 Query 37450 AAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAAT-AT 37508 || |||| | ||| | | | |||| ||| || ||||| | | | || | || Sbjct 47727 AAGATTTTTTCATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCAT 47785 Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 || ||||||| | || | |||||| || || || |||||||||||| |||| ||| Sbjct 47786 GAAGGCATCAGCAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGAT-- 47843 Query 37569 AGACGATTCTATC--ACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACT 37626 | | ||| |||||||| ||||| ||| || | | | |||| | || || | Sbjct 47844 AATCTGGCCTAAGGAACTGGATAGTAATTTTCATCAATAACTCTGTTTA-AGTTAAAAGT 47902 Query 37627 -AGTATTTTCGTAATTATTCTCAACTTGT------CGAAC-ATAAATA--CGTTATTATT 37676 | |||||| | ||| ||| || | |||| || ||| | |||| | Sbjct 47903 GACTATTTTTGATATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTC 47962 Query 37677 AACAA---ATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTT 37733 ||||| |||| || |||||||| | | |||||||||||||| ||||||| Sbjct 47963 AACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGA 48022 Query 37734 ACTAAATTGTATAATCTCTGTACAGAGATT---ACTCGATCTAATTGTTCCCAAATTGCT 37790 | || ||| ||||| || ||||| | ||| ||| |||||| || |||||||| Sbjct 48023 AGTATATTCAATAATTTCAGTACACAAATTTGAACT---TCTAATAGTCCCCAAATTTTA 48079 Query 37791 TTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTAT 37850 || ||| |||| ||||||||| ||||||||||| ||||| || ||||| |||||| Sbjct 48080 TTAATTACTTTTTCTATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTAT 48139 Query 37851 TTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGCTTTAAttttttt 37910 || || || |||||| || ||| | ||| ||||||| || ||| | |||| Sbjct 48140 TTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAAT--TCTTTTTCTTCCTTTT 48197 Query 37911 CTTTGT--TTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAAT 37968 | || | ||| |||| || | ||| | ||| || | ||||| ||||| ||| Sbjct 48198 CCTTCTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAA 48257 Query 37969 CCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATA 38028 ||| |||||| || ||||| | || ||| | ||||||| || | | |||| Sbjct 48258 CCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATA 48317 Query 38029 AATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCT 38088 || | |||||| | |||||| ||| || | |||| | | ||| | ||||| || || Sbjct 48318 AAAATATCAGGAATCCATAACGCATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCA 48377 Query 38089 ACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATC 38148 ||| ||| |||| || ||||||||| | |||||| ||||| ||||| | ||| || Sbjct 48378 TGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATA 48437 Query 38149 GACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATAT 38208 | | || |||| |||||| ||||||| | | | |||||| |||| | |||| | Sbjct 48438 GCAAATGATCCTTTTCTTTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAAC 48497 Query 38209 ATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCC 38268 | | ||||||| || | || |||||||| | || || | || |||||| || | Sbjct 48498 ACTTTTAACATCGGAATAATTCCATTAGAATGTCCATTAGTTCCTCTAATATAACTATCT 48557 Query 38269 TTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCG 38328 | || || ||||||| | || | |||||||| || ||| || ||||||||||| Sbjct 48558 TAAGATCTTATATTATGAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCA 48617 Query 38329 CATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAA 38388 |||| ||| || |||||| |||| ||||| || ||| || || | | || ||| Sbjct 48618 CATTATTTCAATGTATCATATATGCCTTCAATTGAATCACTCTACATAGTCAATAAGAAA 48677 Query 38389 CAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATG 38448 |||||| ||| | ||| ||||| ||| ||||||||||| ||||||| |||||| || Sbjct 48678 CAACTACTCATCTAAGGGTTTGGAGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTG 48737 Query 38449 AACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGA 38508 ||||||||||| || |||| || ||| | | || | || || | ||| Sbjct 48738 AACCATTTTTCACTCATTAAATTGTAAGTTCTGAATGCACTTTATAAGTCTCTTTTGTGG 48797 Query 38509 ATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGT 38568 ||||||| || || ||||||| |||| || |||||||| | ||||| | | Sbjct 48798 ATACCTATGGAAACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATT 48857 Query 38569 TTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTA 38628 || | ||||| ||| ||||||| || || | |||||| | ||| | ||||||||| Sbjct 48858 TTTAAAAGATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTT 48917 Query 38629 TCGTATGCTATTACATTA-TCGATTATATCTCTATGTTTATTTACTTGTTGATATAGAT 38686 || || |||| |||| | ||||| || || || | ||||| || ||||| || Sbjct 48918 TCATAGTTTATT-TATTATTGGATTAAGTCAGCATTTTCAATTACTATTTAATATACAT 48975 >seq1353 Length=60684 Score = 275 bits (304), Expect = 6e-69 Identities = 424/596 (71%), Gaps = 18/596 (3%) Strand=Plus/Minus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| |||||||| |||||| ||||||||||| ||||| |||||| ||||| ||| Sbjct 30133 AAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGTT 30074 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCA-AATGAACCAGAAAA 11745 || || ||||| || || |||||| | |||||| || || ||| || ||| || Sbjct 30073 AAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGC-GCAGAAACTTCCACTGAA 30015 Query 11746 GAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCC---ATATACCTTGTTGCT 11802 ||| ||||| || | |||||||||||| |||| || | || | || || | Sbjct 30014 GAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTATTATT 29955 Query 11803 AGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCAT---TGTTTCTAT 11859 | ||||||||| ||||| | |||||| || |||| || || | ||| | Sbjct 29954 A---ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTA----TTACAGGAATATTTAGAC 29902 Query 11860 A-GCGTTAAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 | || ||||| | | | |||||| ||| |||| ||| ||| ||||||||||||||| Sbjct 29901 AAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAG 29842 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 ||| |||| ||||||||||||||||||||||||| ||||||||||||| || ||| | Sbjct 29841 AATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTT 29782 Query 11979 CTGAACACTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCA 12037 ||| | | || || ||||| |||| ||| |||||||| || ||||| ||||| Sbjct 29781 CTGGAATTTAAACTTCACACAT-AAATTATTCAGCTAAATTTTCTAGAACAATTCCATCT 29723 Query 12038 CTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA 12097 || |||||||||||| || | || || ||||||| | | ||| | | ||| ||| | Sbjct 29722 GAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTT 29663 Query 12098 TCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACT 12157 |||||||| | ||||||| | | ||| | ||| || | |||||||| || | | Sbjct 29662 TCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGT 29603 Query 12158 GATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || ||| ||||||| ||| || | || ||| || || ||||| ||||| || || Sbjct 29602 TCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCT 29547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468512987318480