Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq861 349 5e-91 seq1353 244 1e-59 >seq861 Length=133231 Score = 349 bits (386), Expect = 5e-91 Identities = 1169/1799 (65%), Gaps = 54/1799 (3%) Strand=Plus/Plus Query 64914 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 64973 |||||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 64974 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 65033 | | || ||| || || | | ||| ||| | || || || | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 65034 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 65090 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 65091 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 65150 | |||||| || |||| | |||||| | | | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTA 47381 Query 65151 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 65210 ||||| || || ||||| |||||||| |||||| || | | |||||| | Sbjct 47382 ATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTT 47441 Query 65211 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 65270 || || | |||| ||||| ||||| | ||| ||| |||||| ||||||| || ||| Sbjct 47442 GTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTA 47501 Query 65271 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 65330 || ||||| |||||||| || | || | | |||||| | ||| ||| || |||||| Sbjct 47502 GAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTA 47561 Query 65331 TCTTTTAGAGGTTCCCAATT----CCAAAGATCCGACGGT-ACAACNNNNNNNNNNNNNN 65385 ||||| || ||||||| ||| | | || | | | || Sbjct 47562 CTTTTTAAAGAATCCCAATCATAACCACATTTATGAGGTTTATAATTCCATAAATCAAAC 47621 Query 65386 NTTGTAGAAT--ACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTT 65443 || ||| ||| | | || || |||||| | | | || ||| || || Sbjct 47622 ----TACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTT 47677 Query 65444 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 65503 ||| | ||| || || | || || |||||||| ||||| ||||| || | Sbjct 47678 TATAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTC 47737 Query 65504 ATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTG 65562 ||| | ||| |||| || || || | | | |||||| || || || || | Sbjct 47738 ATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAG 47796 Query 65563 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 65622 | | ||||| |||||| || || |||||||||||| || |||| || | | || | | Sbjct 47797 CAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAG 47856 Query 65623 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGA 65679 ||| ||||| ||||| ||| |||| | | || | || |||| ||| ||||| Sbjct 47857 GAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATT--TTTGA 47914 Query 65680 CCACATCCTTCAGTTTGA-------GAAA-ATCAAATCGC----TCATCTATTACAAACA 65727 | || | || ||| |||| || || | | || || | ||||| Sbjct 47915 T-ATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAAATT 47973 Query 65728 TGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 65787 | | || | || ||| |||| |||||| || || | |||| | | ||||| | Sbjct 47974 TTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAA 48033 Query 65788 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 65847 | || ||||| || | ||| || | || || || ||||||| || |||||| ||| Sbjct 48034 TAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTC 48093 Query 65848 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 65907 | ||||| ||||| ||||| | || | ||||| |||||||| || | ||| || |||| Sbjct 48094 TATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAA 48153 Query 65908 TCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTA 65965 | ||| ||| | ||| || || ||| | ||| | || || ||||||||| || Sbjct 48154 TATCTTGCCAAAGTTCTCTGGCTTTAATTCTT--TTTCTTCCTTTTCCTTCTCTTTCATA 48211 Query 65966 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 66025 | || | | ||| || || ||||||||||||| || || |||||||| Sbjct 48212 TTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATT 48271 Query 66026 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 66085 || |||||||| | ||| | | | || | | |||| | ||||||| | ||||||||| Sbjct 48272 AGGGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAAT 48331 Query 66086 CCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 66144 ||| | || ||| || | |||||| | ||| || || || ||||| ||| ||||| | Sbjct 48332 CCATAACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTA 48390 Query 66145 GATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 66204 | | || | | || |||| |||||| |||||||| ||||| || | ||| Sbjct 48391 ATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTT 48450 Query 66205 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 66264 | |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| | Sbjct 48451 TTCTTTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCG 48510 Query 66265 GAATAATACCATT-GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATA 66323 ||||||| ||||| | |||| ||||| || || ||||| || | | | ||| Sbjct 48511 GAATAATTCCATTAGAATGT-CCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATA 48569 Query 66324 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 66383 ||| || ||| | ||||||||| || || | ||||| ||||| || ||| ||| || Sbjct 48570 TTATGAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAAT 48629 Query 66384 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 66443 |||||||| ||||| || || |||| | ||| | | || ||||| ||| ||| Sbjct 48630 GTATCATATATGCCTTCAATTGAATCACTCTACATAGTCAATAAGAAACAACTACTCATC 48689 Query 66444 T---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTT 66500 | ||| | || ||| || |||||||| ||||||| || || || ||||||||| Sbjct 48690 TAAGGGTTTGG---AGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTT 48746 Query 66501 TCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATA--TCCCATTGATGAATTCCT 66557 ||| | || |||||| | ||| ||| || | | |||| || | || || || ||| Sbjct 48747 TCACTCATTAAATTGTAAGTTCTGAAT-GC--ACTTTATAAGTCTCTTTTGTGGATACCT 48803 Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 | | || | ||||||||| | |||||||| || || || || ||||| || Sbjct 48804 ATGGAAACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAA 48863 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 | || ||| |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48864 AGATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 244 bits (270), Expect = 1e-59 Identities = 507/743 (68%), Gaps = 10/743 (1%) Strand=Plus/Minus Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 36091 CGCGTCTGTTATAATAGATATTA-CTGTTTCTTCA-CTCGGTGGATACA-ATAAATGTTT 36147 || || | |||||| | |||| || ||||| | || | | | || | || | Sbjct 30197 AGCTTCAGCGATAATA-ACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGT 30139 Query 36148 AAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGA 36207 ||| |||||| || ||||| |||| || |||||||| |||||||| || || Sbjct 30138 AAAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGA 30081 Query 36208 AAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATC 36266 ||| || | || ||||||| | |||||||||||||| |||| |||| || || Sbjct 30080 AAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTC 30022 Query 36267 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC 36326 || ||||| |||||||| | || ||||| |||| | || | || | || Sbjct 30021 CACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCAT 29962 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 36386 | | || ||||| ||| |||||| | || || || |||| ||| || | Sbjct 29961 TATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGAC 29902 Query 36387 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 36446 ||| ||||| ||| | | |||||||||| |||||| | ||| ||||| || || | | Sbjct 29901 AAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAG 29842 Query 36447 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 36506 ||| |||| |||||||| ||||| || || |||| |||||| |||||| ||| || | Sbjct 29841 AATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTT 29782 Query 36507 CGGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 | | ||| | ||||| ||| |||| ||| ||||||||||| || ||||| || Sbjct 29781 CTGGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCT 29723 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 ||||||||||| || | |||| || ||||| | | | ||| || | | | Sbjct 29722 GAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTT 29663 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | Sbjct 29662 TCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGT 29603 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 36745 | ||||| ||||| | ||| || | || ||||| ||||| || ||||||||||| ||| Sbjct 29602 TCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTT 29543 Query 36746 TGATTTTTTGCAAGGATTGGTTC 36768 |||||| | ||| |||||||| Sbjct 29542 GGATTTTCTTAAAGAATTGGTTC 29520 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/219 (70%), Gaps = 13/219 (6%) Strand=Plus/Minus Query 35814 AAAAATCAACATCTAGA--GAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 35868 |||||||| ||| || ||||| | || ||||||| ||| ||||||||| ||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACT--TTATCTTCTTTAGAAGACATAACTCCTGATTT 30475 Query 35869 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTC 35928 || |||||||| || | ||||| || ||||||||||| |||| | |||| | || Sbjct 30474 TTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATC 30415 Query 35929 CATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 35988 ||| | || || || || | |||| | | |||| | | || | |||| ||| Sbjct 30414 CATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAA---GAGAATACAA 30358 Query 35989 ---TCTATCTGCGACAAATTCTATATATGTTTTCATCAT 36024 ||||||||| |||||||||| |||| ||||||||| Sbjct 30357 AAGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658156205818280