Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq861 430 2e-115 seq1353 246 4e-60 >seq861 Length=133231 Score = 430 bits (476), Expect = 2e-115 Identities = 1188/1794 (66%), Gaps = 44/1794 (2%) Strand=Plus/Plus Query 78793 TAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 78852 || ||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 78853 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 78912 | | || ||| || || | | ||| ||| | || || || | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 78913 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 78969 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 78970 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTC-ATTCCATAATTTTCTCTC 79028 | |||||| || |||| | |||||| | | || | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAA-CACTAGGAGTCCATTGATTTATTTT 47380 Query 79029 GGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCG 79088 ||||| || || ||||| |||||||| |||||| || | | |||||| | Sbjct 47381 AATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCT 47440 Query 79089 AGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGT 79148 || || | |||| ||||| ||||| | |||||| |||||| ||||||| || ||| Sbjct 47441 TGTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGT 47500 Query 79149 TGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTT 79208 || || ||||||||||| || | || | | |||||| | ||| ||| | ||||| Sbjct 47501 AGAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTT 47560 Query 79209 ATCTTTTAGAGATTCCCAATC----CCAAAGATCAGACGGGACAACATTCCAAAGATCAT 79264 | ||||| ||| |||||||| ||| | | || || | |||||| | |||| Sbjct 47561 ACTTTTTAAAGAATCCCAATCATAACCACATTTATGA-GGTTTATAATTCCATAAATCAA 47619 Query 79265 ATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTT 79324 | | | |||| | | ||| || ||| | | ||||| ||| || ||| Sbjct 47620 ACTACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTTTA 47679 Query 79325 CGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTAT 79384 || ||||| || || | ||||| |||||||| ||||| || || || | || Sbjct 47680 TAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTCAT 47739 Query 79385 TGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTGCT 79443 ||| ||| |||| | || || || | | | |||||| || || || || || Sbjct 47740 TGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCA 47798 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 | ||||| |||||| || || |||||||||||| || |||| || | | || | ||| Sbjct 47799 AGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAGGA 47858 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCC---TGACTATT------ACT 79554 | ||||| ||||| ||| |||| | | || | || |||||||| | | Sbjct 47859 ACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATTTTTGATATT 47918 Query 79555 TTGACCACATCCTTTAGTTTGAGAAAATCAAAT--CGTC--CATCTATTACAAACATGTT 79610 | | || | || || || || || || | | | | || | ||||| | | Sbjct 47919 TCGTACAATTTATTATATTCGA-AATATGAATTTTCATTATCTTCAACAACAAATTTTTA 47977 Query 79611 CAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 79670 || | | ||| |||| |||||| || || | |||| | | ||||| || || Sbjct 47978 TAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAATAAT 48037 Query 79671 TTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 79730 |||||| || | || || |||| || || ||||||| || |||||| ||| | || Sbjct 48038 TTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTCTATT 48097 Query 79731 ACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 79790 ||| ||||| ||||| | || | ||||| |||||||| || | ||| || ||||| | Sbjct 48098 ACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAATATC 48157 Query 79791 TTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTT--TTCTCTTTCGTATTGT 79848 || ||| | ||| || || ||| | || | || || ||||||||| |||| Sbjct 48158 TTGCCAAAGTTCTCTGGCTTTAATTCTTT--TTCTTCCTTTTCCTTCTCTTTCATATTTC 48215 Query 79849 GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGA 79908 || | | ||| || || |||||||||||||| ||| || |||||| | ||| Sbjct 48216 TCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATTAGGG 48275 Query 79909 CACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 |||||||| | ||| | | |||| | | |||| | ||||||| | |||||||||||| Sbjct 48276 CACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCCAT 48335 Query 79969 AGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATC 80027 | || ||| || |||||||| | ||| ||||| || ||||| ||| ||||| | | Sbjct 48336 AACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAATTA 48394 Query 80028 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCG 80087 | || | | || ||||| |||||| |||||||| ||||| || | ||| || Sbjct 48395 TAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTTCT 48454 Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| ||||| Sbjct 48455 TTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCGGAAT 48514 Query 80148 AATACCATT-GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTAC 80206 ||| ||||| | |||| ||||| || || ||||| || | | | |||||| Sbjct 48515 AATTCCATTAGAATGT-CCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTAT 48573 Query 80207 TAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTAT 80266 || ||| | ||||||||| || || | ||||| ||||| || ||| ||| || |||| Sbjct 48574 GAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTAT 48633 Query 80267 CATAGATGCCCTCTATGCTATCA-TCAATCATGTTAAGTAGAAAACAGCTAGACATTT-- 80323 |||| ||||| || || |||| || | ||| | | || ||||| ||| ||| | Sbjct 48634 CATATATGCCTTCAATTGAATCACTCTA-CATAGTCAATAAGAAACAACTACTCATCTAA 48692 Query 80324 -GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 80382 ||| | || ||| || |||||||| ||||||| || || || |||||||||||| Sbjct 48693 GGGTTTGG---AGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTCA 48749 Query 80383 GACAGTAGATTGTACG-TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGC 80441 || || |||||| | ||| ||| || || || || | || || || |||| | Sbjct 48750 CTCATTAAATTGTAAGTTCTGAAT-GCACTTTATAAGTCTCTTTTGTGGATACCTATGGA 48808 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 80501 || | ||||||||| | |||||||| || || || | ||||| || | || Sbjct 48809 AACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAGATA 48868 Query 80502 AGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 80555 |||| |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48869 AGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 246 bits (272), Expect = 4e-60 Identities = 505/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCTTCA-CTCGGTGGATGCA-ATAAATGTTTA 49950 || || | |||||| |||| ||||| | || | | | || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 || |||||| || ||||| || | || |||||||| |||| ||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCC 50069 || || | || ||||||| | |||||||||||||| |||| |||| || || Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCC 30021 Query 50070 AGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT 50129 | |||||||||||||| | || ||||| ||||| | || | || || | | Sbjct 30020 ACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATT 29961 Query 50130 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 | || ||||| ||| |||||| | || || || |||| ||| || || Sbjct 29960 ATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA 29901 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 || ||||| ||| | | |||||||||| |||||| | ||||||||| || || | | Sbjct 29900 AGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGA 29841 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 ||| |||| |||||||| ||||| || || || | |||||| |||||| ||| || || Sbjct 29840 ATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTC 29781 Query 50310 GGTAATCTGCACTTCTGTACA-AAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCAC 50368 | ||| | ||||| ||| |||| ||||||||||||||| || ||||| || Sbjct 29780 TGGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTG 29722 Query 50369 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTAT 50428 ||||||||||| || | |||| || ||||| ||| | ||| || | | | | Sbjct 29721 AAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTT 29662 Query 50429 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 50488 |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | Sbjct 29661 CCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTT 29602 Query 50489 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTG 50548 | ||||| ||||| | ||| || | || ||||| |||||||| ||||||||||| |||| Sbjct 29601 CTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTG 29542 Query 50549 GATTTGGTGCAAGGATCGGTTC 50570 ||||| | ||| || ||||| Sbjct 29541 GATTTTCTTAAAGAATTGGTTC 29520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 136/191 (71%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 49642 TTATCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAA 49698 |||||||||| ||| ||||||||| ||||| |||||||| || | ||||| || Sbjct 30506 TTATCTTCTTTAGAAGACATAACTCCTGATTTTTAATATTCACCAACTCTCTTTTCAAAG 30447 Query 49699 AAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTA 49758 |||||||||||||||| | |||| | ||||| | ||||| || || | |||| Sbjct 30446 AAATTAGTTTTTCCTTAAATACATATCATATCCATCCACTCAAAAGGGTTTTTTGAATTA 30387 Query 49759 TAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCCGCGACAAATTCTATATAT 49815 | | |||| | | || | |||| ||| |||||| || |||||||||| |||| Sbjct 30386 AATAATTTTGGATAACCAA---GAGAATACAAAAGTCTATCTGCAACAAATTCTAAATAT 30330 Query 49816 GTTTTCATCAT 49826 ||||||||| Sbjct 30329 TCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718250690647880