Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1353 224 1e-53 >seq1353 Length=60684 Score = 224 bits (248), Expect = 1e-53 Identities = 443/647 (68%), Gaps = 19/647 (3%) Strand=Plus/Minus Query 13848 TATTTTAGATGTTTAA--AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 13905 ||||||| || || | ||| ||||| |||||||| ||| | || || ||||| Sbjct 30156 TATTTTACATCATTGAGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTG 30097 Query 13906 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 13965 || | ||| |||||||| ||||| || ||||| || || |||||| | |||||| | Sbjct 30096 ATATTAATTCATTTGAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAA 30037 Query 13966 TTGC--AGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCG 14023 | || || || | | | ||| ||| ||||| |||| || ||||| || | |||||| Sbjct 30036 TGGCGCAGAAACTTCCACTGAA--GAAGATTCCTTCAATAGCTGCAAATGCAACTAATCG 29979 Query 14024 TTCTCCAAACGA---TG-CTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttt 14079 || ||| || | || || || ||||||||| |||||||| || ||||| Sbjct 29978 AG----AAGCGAAATTGTCATTATTATTA---ATCCATTTTAAAGCCCATTAAGCTTTTT 29926 Query 14080 ttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTG 14139 | || || | | || || | ||| ||||| | | | || || || ||| | | Sbjct 29925 TATTTATTACAGGAATATTTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTT 29866 Query 14140 AAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCT 14199 || || ||||| || | ||| ||| |||| || || || |||||||||||||| | Sbjct 29865 TTATATAAGTATCTATTAATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTT 29806 Query 14200 GAAAACCATA-AAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCC 14258 ||| ||||| ||||| ||| ||||| | || ||||| | |||| ||| || Sbjct 29805 AAAATCCATAGAAAGC-TCTTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCT 29747 Query 14259 AAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAG 14318 |||||||| ||| || ||||| ||||||||||||||| | | | ||||||||| Sbjct 29746 AAATTTTCTAGAACAATTCCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAG 29687 Query 14319 TATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCA 14378 | | ||| ||| | | | ||| |||||| ||||| | | ||||||| | ||| Sbjct 29686 TGTCTCTCGCCATCAGTCAATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCG 29627 Query 14379 TCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAAT 14438 || |||||||||| ||||| ||||||| |||||| ||||||||| |||||| | Sbjct 29626 TCTGCTGTCCAAAATGAAGCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTT 29567 Query 14439 ATAGGAAAAACTACAAATCTCGAAGATGTTTCTTTAAGAATTGGTTC 14485 || || || | |||||||| | |||||| |||||||||||| Sbjct 29566 ATTGGGAACATAACAAATCTGTTTGGATTTTCTTAAAGAATTGGTTC 29520 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||||||| ||| |||| ||||| ||||| ||||| ||| ||||| || ||||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACTTTATCTTCTTTAGAAGACATAACTCCTGATTTTT 30473 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 |||||||| |||||| ||||||||||| |||||||| |||| | |||| | |||| Sbjct 30472 AATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATCCA 30413 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA-- 13702 | | ||||| || ||| |||| |||| | ||| | |||| || |||| || Sbjct 30412 TCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAAG--AGAATACAAAAG 30355 Query 13703 TCTATCAGCAATAAACTCAATATATT 13728 |||||| |||| ||| || | ||||| Sbjct 30354 TCTATCTGCAACAAATTCTAAATATT 30329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479715904857800