Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1353 205 9e-48 >seq1353 Length=60684 Score = 205 bits (226), Expect = 9e-48 Identities = 501/749 (67%), Gaps = 19/749 (3%) Strand=Plus/Minus Query 13533 ATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACAC 13592 |||||| || |||| || ||||| | | || | |||||||||||| || || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 13593 AGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA- 13651 ||| || ||||||| |||| || |||| | ||||||| || || | Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCT--AATTTATTTTACATCATTGAG 30140 Query 13652 -AAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAA 13710 ||| ||||| |||||||| ||| | || || ||||| || | ||| |||||| Sbjct 30139 TAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 13711 AATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCG 13770 || ||||| || ||||| || || |||||| | |||||| || || ||| ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCA 30020 Query 13771 GAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGA---TG-C 13826 ||||| ||||| |||| || ||||| || | || ||| || ||| || | Sbjct 30019 CTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAG----AAGCGAAATTGTC 29964 Query 13827 TTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGT 13886 || || || ||||||||| |||||||| || |||||| || || | | || | Sbjct 29963 ATTATTATTA---ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATA-T 29908 Query 13887 TTCGATT-GCATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAA 13945 || || || || || | | || || || ||| | | || || ||||| || | Sbjct 29907 TTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTA 29848 Query 13946 GTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATC 14005 ||| ||| |||| || || || ||||| |||||||| | ||| ||||| ||| || Sbjct 29847 ATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTC 29788 Query 14006 TAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATAC 14065 | ||||||| || || || | |||| ||| || || ||||| |||||| | Sbjct 29787 TTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATTC 29728 Query 14066 CATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGA 14125 |||| ||||||||||||||| | | | |||||||||| | ||| ||| | | Sbjct 29727 CATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCA 29668 Query 14126 GTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAG 14185 | ||| |||||| ||||| | | ||||||| | ||| || |||||||||| || Sbjct 29667 ATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAG 29608 Query 14186 CGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATC 14245 ||| ||||||| |||||| ||||||||| |||||| ||| || || | ||||||| Sbjct 29607 CGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATC 29548 Query 14246 T-TGAAGATGTTTCTTTAAGAATTGGCTC 14273 | | ||| |||||| ||||||||| || Sbjct 29547 TGTTTGGAT-TTTCTTAAAGAATTGGTTC 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478576733579880