Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1038 114 1e-20 seq892 86.0 5e-12 >seq1038 Length=46086 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 |||||| || ||||||| ||| |||||||| | ||||||||| || | ||| | | | Sbjct 44058 TCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCC 43999 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 || || |||| ||| || || ||||| |||| | || ||| | || | |||||| || Sbjct 43998 ATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTT 43939 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| |||| || | ||| || || ||| || ||||||| || || Sbjct 43938 ATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAAT 43879 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCA-TTTTCTTAATTTTA 43122 ||||||||| |||| ||||| |||||||||| || |||| || |||||| Sbjct 43878 AGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTTTTATTTTA 43829 >seq892 Length=79579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | |||||||| || ||||||| || || |||| | |||||| || || Sbjct 46669 CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAA 46728 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | |||| || |||| ||| || || || || | || | || ||| | || Sbjct 46729 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 46788 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||||||| || ||| ||||||| | ||| | |||| ||| || || Sbjct 46789 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 46848 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || || ||||||||||||| ||||| || || |||| ||| Sbjct 46849 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 Score = 82.4 bits (90), Expect = 6e-11 Identities = 170/251 (68%), Gaps = 3/251 (1%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| || || ||||||| || || |||| | |||||| || || | || | | | Sbjct 47364 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47423 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| || |||| ||| || || || || | || | || ||| | || | ||||||||| Sbjct 47424 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47483 Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073 || ||| ||||||| | ||| | |||| ||| || || |||| || || Sbjct 47484 GTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGAT 47543 Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT--TTTCTTAATTTTATTTGTACAC 43131 ||||||||||||| ||||| || || |||| ||| ||| || ||||| ||| | Sbjct 47544 TGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATTTATTTT-TTTATTTTT 47602 Query 43132 TTTGTTTTCTT 43142 |||||||| || Sbjct 47603 TTTGTTTTTTT 47613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381360225100986