Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011
-07-18] 2,017 sequences; 48,799,969 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq1038 114 1e-20
seq892 86.0 5e-12
>seq1038
Length=46086
Score = 114 bits (126), Expect = 1e-20
Identities = 164/230 (71%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953
|||||| || ||||||| ||| |||||||| | ||||||||| || | ||| | | |
Sbjct 44058 TCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCC 43999
Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013
|| || |||| ||| || || ||||| |||| | || ||| | || | |||||| ||
Sbjct 43998 ATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTT 43939
Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073
|| ||| |||| || | ||| || || ||| || ||||||| || ||
Sbjct 43938 ATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAAT 43879
Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCA-TTTTCTTAATTTTA 43122
||||||||| |||| ||||| |||||||||| || |||| || ||||||
Sbjct 43878 AGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTTTTTATTTTA 43829
>seq892
Length=79579
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942
||||| | |||||||| || ||||||| || || |||| | |||||| || ||
Sbjct 46669 CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAA 46728
Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002
| || | | |||| || |||| ||| || || || || | || | || ||| | ||
Sbjct 46729 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 46788
Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062
| ||||||||| || ||| ||||||| | ||| | |||| ||| || ||
Sbjct 46789 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 46848
Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||| || || ||||||||||||| ||||| || || |||| |||
Sbjct 46849 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895
Score = 82.4 bits (90), Expect = 6e-11
Identities = 170/251 (68%), Gaps = 3/251 (1%)
Strand=Plus/Plus
Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953
||| || || ||||||| || || |||| | |||||| || || | || | | |
Sbjct 47364 TCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCC 47423
Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013
||| || |||| ||| || || || || | || | || ||| | || | |||||||||
Sbjct 47424 GTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTT 47483
Query 43014 TTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTAT 43073
|| ||| ||||||| | ||| | |||| ||| || || |||| || ||
Sbjct 47484 GTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGAT 47543
Query 43074 AGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT--TTTCTTAATTTTATTTGTACAC 43131
||||||||||||| ||||| || || |||| ||| ||| || ||||| ||| |
Sbjct 47544 TGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTATTTATTTT-TTTATTTTT 47602
Query 43132 TTTGTTTTCTT 43142
|||||||| ||
Sbjct 47603 TTTGTTTTTTT 47613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381360225100986
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |