Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq861 372 4e-98 seq1353 237 2e-57 >seq861 Length=133231 Score = 372 bits (412), Expect = 4e-98 Identities = 1187/1825 (65%), Gaps = 40/1825 (2%) Strand=Plus/Plus Query 70843 TACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAA 70902 || || |||||||||| || ||| | |||||||||||| || | ||||||| Sbjct 47109 TAAATACCTGTTTTTAATCCTTTTTCCCAAGCATAAAAATGCATAGAAGTCATTTTGGAA 47168 Query 70903 TAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTG 70962 || ||||| || | || |||||||| | || | | || ||| || || | | ||| Sbjct 47169 TAACTAGGTTCTGAAATATGAATATTAAGAGATTAAGATTAATCAATAAATGGACTCCTT 47228 Query 70963 TCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGC 71022 ||| | || || || | |||||||| || |||||||| ||||||||||| | Sbjct 47229 GACAAAGCTAAATTAATAATGGCCTTTTGTGAAACTTCCCAAACAGTTTTATAAATATCC 47288 Query 71023 TTAATATCTTCTGGAAGGT-TTGTATTC--TGAATGGATCCACCATCTGCAA-TAATCCT 71078 || | | ||| |||| | || |||| | || |||||| || || | || | | Sbjct 47289 TTCAAACTTTCAGGAATTTCTTATATTTATTAAACAGATCCATTATAAGCCAGTAGT--T 47346 Query 71079 ATTTTTGATCTCTTC-ATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGAT 71137 | || | | | || | ||||| ||| | | ||||| || || |||||||||| Sbjct 47347 AATTCTTAACACTAGGAGTCCATTGATTTATTTTAATTAAATCTTAAACAAGATGAGGAT 47406 Query 71138 TAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTT 71197 |||| |||||| || | | |||||| | || || | |||| ||||| |||| Sbjct 47407 TAACACAAACAAATTCACCCGCGAGTACTCTTCTTGTATATAAATTAGAAGTATAAGGTT 47466 Query 71198 CCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 71257 | | || ||| |||||| ||||||| || ||| || ||||| |||||||| || | | Sbjct 47467 CAAAAGATTCACAATTTCCTAAAATTTAAGAAGTAGAAGCAGTTGGCATAGGAGCTATTA 47526 Query 71258 ATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATT----C 71313 | ||| |||||| | ||||| | | |||||| ||||| ||| ||||||| | Sbjct 47527 AAAGAGAATTTCTCATACCATATTTTTATATTTTACTTTTTAAAGAATCCCAATCATAAC 47586 Query 71314 CAAAGATCCGATGGTACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTAT 71373 || | | || ||| | | || | | ||| Sbjct 47587 CACATTTATGA-GGTTTATAATTCCATAAATCAAACTACAATTTACCCTAAGAAGCAGGG 47645 Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| || | | | || ||| |||||| || | ||| || || | Sbjct 47646 GAGCCTACAAAAGAGGCATAACATCCATCTTTTATAGCCAATTCCATGGATGCTTCACAA 47705 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| ||||| || || || | ||||| ||| |||| || || Sbjct 47706 GCTCCATAATAAATAGTTTCAAAGATTTTTTCATTGATTTCTAAGGCTTTTTCACTTTCG 47765 Query 71494 AATGGATAATTTAAGAGA-ATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 || | | | |||||| || || || || || | ||||| ||| || || || ||||| Sbjct 47766 AAAGAA-ACTTTAAGCTTCATGAAGGCATCAGCAAGTCCTTAAACACCTATTCCAATAGG 47824 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 ||| ||| || |||| || | | || | |||| ||||| ||||| ||| |||| Sbjct 47825 TCTATGTTTCATATTGGATAATCTGGCCTAAGGAACTGGATAGTAATTTTCATCAATAAC 47884 Query 71613 TTTATTGAGATTTC---TGACTATT------ACTTTGACCACATCCTTTAGTTTGAGAAA 71663 | | || | || |||||||| | || | || | || || || || Sbjct 47885 TCTGTTTAAGTTAAAAGTGACTATTTTTGATATTTCGTACAATTTATTATATTCGA-AAT 47943 Query 71664 ATCAAATCTCCC-ATCTATTACAAACACGTTC---AAGGCAACAGATGCCAGATTACAAA 71719 || || | || |||| |||| | || || | || ||| |||| |||||| | Sbjct 47944 ATGAATTTTCATTATCTTCAACAACAAATTTTTATAAAGAAATAGAAGCCAAATTACATA 48003 Query 71720 CGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGA 71779 | || | |||| | | ||||| ||||||||||| || | ||| || | | Sbjct 48004 CAGCAATTTCATCTGGTGAAGTATATTCAATAATTTCAGTACACAAATTTGAACTTCTAA 48063 Query 71780 TGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACG 71839 | || || ||||||| || |||||| ||| | ||||| ||||| ||||| | ||| | | Sbjct 48064 TAGTCCCCAAATTTTATTAATTACTTTTTCTATTACAAGCATCTTTATATAACATATAAG 48123 Query 71840 GAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTA 71899 |||| |||||||| || | ||| || ||||| ||| ||| | ||| || || ||| Sbjct 48124 GAGTTCCAGTTTCTATTTAAGAATCAATAATATCTTGCCAAAGTTCTCTGGCTTTAATTC 48183 Query 71900 TATT-CTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCC 71958 | || ||| | || || ||||||| |||| || | | ||| || || |||||| Sbjct 48184 TTTTTCTTCCTTTTCCTT-CTCTTTCATATTTCTCGTAGAGTTTTTCAAATTCTTCTCCC 48242 Query 71959 CAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCA 72018 ||| ||| ||| || ||||||||| || |||||||| | ||| | | |||| || Sbjct 48243 CAAACATCAGGTAAACCTAAACATTCATTAGGGCACATCAAAGTCCAATGTTCATCTGCA 48302 Query 72019 TTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCT 72077 | |||| | ||||||| | |||||||||||| | || ||| || |||||||| | ||| Sbjct 48303 ATAACTCTTCTCATAAAAATATCAGGAATCCATAACGC-ATAGAAAAGATCTCTTGCTCT 48361 Query 72078 ATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 72137 ||||| || ||||| ||| ||||| | | | || | | || ||||| |||||| Sbjct 48362 TTGCTCTTCTTTTCCATGATTTTTTTTTAATTATAAAAAATCGAAAACATCAGCATGCCA 48421 Query 72138 CGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCT 72197 |||||||| ||||| || | ||| | |||| ||||| | |||| ||||| Sbjct 48422 AGGTTCCAAATATATAGCAAATGATCCTTTTCTTTTGCCACCTCCTTAGTCTACATATCT 48481 Query 72198 AGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCC 72257 || || | |||| | ||| | ||||| |||||||| ||||| || ||||| || || Sbjct 48482 GGCTGTATCATTAAACACTTTTAACATCGGAATAATTCCATTAGAATGTCCATTAGTTCC 48541 Query 72258 GGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCAT 72317 ||||| || | | | ||||| || ||| | ||||||||| || || | Sbjct 48542 TCTAATATAACTATCTTAAGATCTTATATTATGAACTGAAACACCTATTCCTCCCGCACT 48601 Query 72318 TTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCAT 72377 ||||| ||||| || ||| ||| || |||||||| ||||| || || |||| | Sbjct 48602 CTTAGATATTAAAGCACATTATTTCAATGTATCATATATGCCTTCAATTGAATCACTCTA 48661 Query 72378 CATGTTAAGTAGAAAACAGCTAGACATTT---GGTGACGACTAGTTCCCGCATTAAATAA 72434 ||| | | || ||||| ||| ||| | ||| | || ||| || |||||||| Sbjct 48662 CATAGTCAATAAGAAACAACTACTCATCTAAGGGTTTGG---AGATCCTGCGTTAAATAA 48718 Query 72435 GGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG-TCTCAATAGCTG 72493 ||||||| || || || |||||||||||| || || |||||| | ||| ||| || Sbjct 48719 AGTAGGAGTTGCATGAGTGAACCATTTTTCACTCATTAAATTGTAAGTTCTGAAT-GCAC 48777 Query 72494 ATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTT 72553 || || || | || || || |||| | || | |||||||||| | ||||||| Sbjct 48778 TTTATAAGTCTCTTTTGTGGATACCTATGGAAACTCTCATTAACATAGTTTAGGGTCTTT 48837 Query 72554 CAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAAT 72613 | || || || | ||||| || | || ||| |||| ||||| || ||||||||| Sbjct 48838 CCACAATTTTTCCGTGAATTTTTAAAAGATAAGATCTTTCTAAAGTCTTGAAACCAAAAA 48897 Query 72614 AGTTGTATGAAAAGTCTCGTTCGTA 72638 ||| || | | | |||| ||| || Sbjct 48898 AGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 237 bits (262), Expect = 2e-57 Identities = 503/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 41938 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 41997 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 41998 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-CTCGGTGGATACA-ATAAATGTTTA 42055 || || | |||||| | ||| ||||| | || | | | || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 || |||||| || ||||| || | || || ||||| |||||||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCC 42174 || || | || ||||||| | |||||||||||||| || | |||| || ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCC 30021 Query 42175 AGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT 42234 | |||||||||||||| | || ||||| |||| | || | || | || | Sbjct 30020 ACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATT 29961 Query 42235 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 42294 | || ||||| ||| |||||| | || || || |||| ||| || || Sbjct 29960 ATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA 29901 Query 42295 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACT 42354 || ||||| ||| | | |||||||||| |||||| | ||| ||||| || || | | Sbjct 29900 AGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGA 29841 Query 42355 ATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 ||| |||| |||||||| ||||| || || || | |||||| |||||| ||| || || Sbjct 29840 ATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTC 29781 Query 42415 GGTAACCTGTACTTCTGTACA-AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCAC 42473 | || | ||||| ||| |||| ||||||||||||||| || ||||| || Sbjct 29780 TGGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTG 29722 Query 42474 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTAT 42533 ||||||||||| || | |||| || ||||| | | | ||| | || ||| | | Sbjct 29721 AAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTT 29662 Query 42534 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTG 42593 |||||| || | ||||| | | | ||| | ||| ||| | ||||||||||| || | Sbjct 29661 CCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTT 29602 Query 42594 CCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTG 42653 | ||||| ||||| | ||| || | || ||||| |||||||| ||||||||||| |||| Sbjct 29601 CTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTG 29542 Query 42654 GATTTGGTGCAAGGATCGGTTC 42675 ||||| | ||| || ||||| Sbjct 29541 GATTTTCTTAAAGAATTGGTTC 29520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671122278902920