Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011
-07-18] 2,017 sequences; 48,799,969 total letters
Query= NC_004117.1
Length=158482
Score E
Sequences producing significant alignments: (Bits) Value
seq1181 93.3 4e-14
seq892 86.0 6e-12
>seq1181
Length=100449
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
||||||| ||| | |||||||||||| | || |||||||||| || ||||||||
Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || ||||| | || ||| || ||| | || || | || | ||| |||||
Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGC-TGTTCCACCGTGTCCGTGGGTTCTAC 143136
|| ||||||||||| ||| |||| | |||| | | ||| | | || | | || ||
Sbjct 75027 ATTCCTTCTTTGTC-TTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAAC 75085
Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | || || || || |||||||| ||||| |||| |||
Sbjct 75086 ATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACAT 75133
>seq892
Length=79579
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017
|| |||| ||| | ||| |||||||| | || |||||||||| || ||||| ||
Sbjct 47353 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47412
Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077
| || || |||||| | || ||| || || |||| || | || | ||| || ||
Sbjct 47413 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47472
Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137
|| ||||||||||| ||||| ||| | | ||| | | ||| | | ||| ||
Sbjct 47473 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47532
Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184
|| | ||| | || || ||||| |||||||| ||||| |||| |||
Sbjct 47533 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47579
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032
|| |||||||| | ||| |||||||||| || ||||| || | || || ||||
Sbjct 46684 AAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCT 46743
Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCG 143092
|| | || ||| || || |||| || | || | ||| || || || |||||||||||
Sbjct 46744 TCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTGTCT 46803
Query 143093 GTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTC 143152
||||| ||| | | ||| | | ||| | | ||| || || | ||| | ||
Sbjct 46804 TAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTT 46863
Query 143153 TTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185
|| ||||| |||||||| ||||| |||| ||||
Sbjct 46864 TTTCCGGTTAATGTTTTGACGAAGATTTACATA 46896
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 507001616899440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |