Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1314 163 2e-35 seq1181 141 7e-29 seq1038 129 4e-25 seq892 122 6e-23 >seq1314 Length=139336 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| ||||| ||||| || ||||| || |||| || |||||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||| ||| |||||| | || | | || || || |||| Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| ||||| ||||||| ||||||| |||| || | ||| | ||| ||| Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 ||||| ||||||||||| ||||| | |||||| || ||||||| ||| || Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq1181 Length=100449 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||| ||||||||||| || ||||| ||||||| || |||||||| Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| | ||||| |||| ||| || || |||| | | || || || ||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| |||||||| || ||| |||| || | |||| || ||| Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| || || ||||||||||| | ||||| || ||||||| ||| ||| Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTT 75137 >seq1038 Length=46086 Score = 129 bits (142), Expect = 4e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| || || || || |||| || |||||||| Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | |||||||||| ||| || ||| | || || | || || || ||| Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| || || |||| ||| ||||| |||| || | ||| | |||||| Sbjct 43949 ATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACG 43890 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15367 ||||| ||||| ||||| || || | ||||| |||||||||| ||| ||| Sbjct 43889 TCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTT 43839 >seq892 Length=79579 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 46897 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 46956 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||| ||| || ||| | || | | || || || ||| Sbjct 46957 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47016 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || | ||||| ||| || ||| |||| || | ||| | ||| || Sbjct 47017 ATACCTTCTTTATCTTAGATTTTAGCT-TTGACATTTTCAATAGAGTCGGAAGCTTCAAC 47075 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 47076 ATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACATA 47124 Score = 122 bits (134), Expect = 6e-23 Identities = 169/233 (73%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 47353 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47412 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||| ||| || ||| | || | | || || || ||| Sbjct 47413 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47472 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| | ||||| ||| || || |||| || | ||| | ||| || Sbjct 47473 ATACCTTCTTTGTCTTAGATTTTAGCT-TTGACGTTTTCAATAGAGTCGGAAGCTTCAAC 47531 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCA-TATTT 15367 |||||| || || ||||| || || | ||||| || || |||| || ||||| Sbjct 47532 ATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTT 47584 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 |||||||| ||||| || |||||||| ||||| || ||||||| || ||||| || Sbjct 47125 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47184 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||| ||| || ||| | || | | || || || ||| Sbjct 47185 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47244 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || | ||||| ||| || || |||| || | ||| | ||| || Sbjct 47245 ATACCTTCTTTATCTTAGATTTTAGCT-TTGACGTTTTCAATAGAGTCGGAAGCTTCAAC 47303 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 47304 ATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATA 47352 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| | |||||| |||||||| || || || ||||||| || ||||| || Sbjct 46669 CCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAA 46728 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| |||| |||||||||||| ||| || ||| | || | | || || || ||| Sbjct 46729 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 46788 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || ||||||||||| | ||||| ||| || || |||| || | ||| | ||| || Sbjct 46789 ATACCTTCTTTGTCTTAGATTTTAGCT-TTGACGTTTTCAATAGAGTCGGAAGCTTCAAC 46847 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||| || || ||||| || || | ||||| || || |||| |||| Sbjct 46848 ATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACATA 46896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362170296842997