Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1181 111 1e-19 seq1314 104 2e-17 seq892 89.7 4e-13 >seq1181 Length=100449 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| ||||| || ||||| || || |||||||||| || |||||||| Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||||||||| ||| || ||| | ||||| || | || ||| || Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| |||||| ||| || | ||| |||||| | || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || | || || ||||| || || || |||||||| ||||||| ||||||| Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTT 75137 >seq1314 Length=139336 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| ||| ||||| |||||||| || || ||||| |||| || |||||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||| |||| ||| || || ||||||| || | || ||| || Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||| ||||| ||||||| || || | ||| ||||| || ||| Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTT 20211 || | ||||||||||| || || || ||||| || ||||||| |||||| Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq892 Length=79579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 6/264 (2%) Strand=Plus/Plus Query 19947 TTTTATT--ATAAAATTTAAATATATTTTATCATTTTCCTCCTCGTAACCTCAACACCAA 20004 ||||||| |||||| || || ||||| || |||||||| | || || || || Sbjct 46636 TTTTATTTGATAAAAA--AATTAAATTTT--CAAAGTCCTCCTCTAAGTCTTAAGACTAA 46691 Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| ||||| |||||||||| || ||||| || | |||| | ||||| |||| Sbjct 46692 ATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTA 46751 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 ||| || || | ||||| || | || ||| ||| | ||||||||||| ||||| Sbjct 46752 TTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTGTCTTAGATTTT 46811 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGT 20184 ||| || | ||| ||| ||| || ||| || | || || ||||| ||||| Sbjct 46812 AGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGT 46871 Query 20185 CAACGTTTTGACAAAAATTTGCAT 20208 || |||||||| || |||| ||| Sbjct 46872 TAATGTTTTGACGAAGATTTACAT 46895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| ||| ||||| || ||||| || || |||||||||| || ||||| || Sbjct 47353 CCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAGAA 47412 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||| | ||||| |||| ||| || || | ||||| || | || ||| ||| Sbjct 47413 AGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGA 47472 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | ||||||||||| ||||| ||| || | ||| ||| ||| || ||| Sbjct 47473 ATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACA 47532 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATTTTT 20212 || | || || ||||| ||||| || ||||| || || |||| |||| || Sbjct 47533 TCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATT 47583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419576885628777