Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1353 196 4e-45 >seq1353 Length=60684 Score = 196 bits (216), Expect = 4e-45 Identities = 505/755 (67%), Gaps = 27/755 (4%) Strand=Plus/Minus Query 13025 TTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACT 13084 ||||| || ||||||| ||||| | |||||| | | ||| | |||||| || ||||| Sbjct 30256 TTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAACA 30197 Query 13085 GCTTC---GATAACTATGTCT-CTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 ||||| ||||| | | ||| || | || ||||| | ||| || || || Sbjct 30196 GCTTCAGCGATAATAACATTAACTTCTT-CTTTAGCTAATTTA---TTT--TACATCATT 30143 Query 13141 AA--ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 | | | || ||| |||||||| || |||||||| ||||| ||||| || ||| Sbjct 30142 GAGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTT 30083 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGA 13257 ||||| |||| ||| ||||| | || |||||||| |||||| || || ||| || Sbjct 30082 GAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGC-GCAGAAACT 30024 Query 13258 ACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT 13317 || || || |||||||||| |||||||| || | || | | | | | Sbjct 30023 TCCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTC 29964 Query 13318 ATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTG-TTTAACGCAGTTCATAT 13376 ||| ||| | ||||| ||| ||||| | ||||||| |||| ||| |||| Sbjct 29963 ATTATTATTA---ATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGA-ATAT 29908 Query 13377 TTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCA 13436 || || ||||| | | | | |||||| ||| ||| |||||||||||||| | Sbjct 29907 TTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTA 29848 Query 13437 ATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATC 13496 |||| ||| |||| ||||||||||||||||| ||||||| || ||||| ||| || Sbjct 29847 ATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTC 29788 Query 13497 TAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCC 13556 | || |||| | | |||||| | |||| ||| ||||| ||||| ||| || | Sbjct 29787 TTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATTC 29728 Query 13557 CGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACA 13616 | || ||| |||||||| ||||| | | ||||||||| | | | ||| || | || Sbjct 29727 CATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCA 29668 Query 13617 ACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAG 13676 | || ||||||| ||||||| | | ||| | || || | |||||||| |||| Sbjct 29667 ATCTTTCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAG 29608 Query 13677 CAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTATC 13736 | | | || || ||||| |||||| | ||||| || || |||| ||| ||| Sbjct 29607 CGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATC 29548 Query 13737 TTCCAGTT--GTCTGTCTTAA--AATCGGTTCACT 13767 | ||| | | |||||| ||| |||||||| Sbjct 29547 T----GTTTGGATTTTCTTAAAGAATTGGTTCACT 29517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430971805509834