Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1353 228 2e-54 seq1181 141 2e-28 seq1314 140 7e-28 seq892 140 7e-28 >seq1353 Length=60684 Score = 228 bits (252), Expect = 2e-54 Identities = 506/748 (68%), Gaps = 22/748 (3%) Strand=Plus/Plus Query 268679 CTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGATATATGG 268738 |||| || |||| ||| | |||||||| || || |||||| | || | | |||||| Sbjct 29529 CTTTAAGAAAAT---CCAAACAGATTTGTTATGTTCCCAATAAAATATAATAAAATATGG 29585 Query 268739 AGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTAT 268798 ||||||||| | | | ||||| |||||||| | ||| ||| | ||||| | ||| Sbjct 29586 GAAATGTACAAAAAAGAACTCGCTTCATTTTGGACAGCAGACGAAATTGATCTTTATTAA 29645 Query 268799 GACTTAATAGATTGGAAAAATTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT 268858 || || | ||||||| ||| || | | || ||| ||||| ||| ||||| Sbjct 29646 GATTTGAAAGATTGGGAAAGATTGACTGATGGCGAGAGACACTTTATTAAGTATGTTCTT 29705 Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAG-AAGTTCTGTCA 268917 || |||||||||| | ||||| || ||| |||||| ||| || || || ||| Sbjct 29706 GCATTTTTTGCAGCTTCAGATGGAATTGTTCTAGAAAATTTAGCTGAATAATTTATGTGT 29765 Query 268918 AGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATAT 268977 || || | ||||| ||||| ||| ||| || ||||| | |||||||| |||||||| Sbjct 29766 -GAAGTTTAAATTCCAGAAGCAAGAGCTTTCTATGGATTTTAAATAGCTATGGAAAATAT 29824 Query 268978 TCATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAA 269037 |||||| || | || | |||||||||||||||||||| | ||| | || |||| || Sbjct 29825 TCATTCCGAAACTTATTCTTTATTAATAGATACTTATATAAAAGATGATAATGAAA--AA 29882 Query 269038 AAGACTATTTT-----CTTCTATGAGAACTATGGACTGT-GTGAGaaaaaaaTCTGAATG 269091 || | |||| ||| | | || ||| |||| | | |||||| || |||| Sbjct 29883 GAGTTTCTTTTTAAAGCTTGTCT---AAATAT-TCCTGTAATAAATAAAAAAGCTTAATG 29938 Query 269092 GGCTCTGAAATGGATAAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 |||| | |||||||| || ||| | || || | |||||||| ||||| || Sbjct 29939 GGCTTTAAAATGGATTAATAATAATGACAATTTCGCTTCTCGATTAGTTGCATTTGCAGC 29998 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 | | ||||| || ||||| || ||| ||| || |||||| | || |||||| Sbjct 29999 TATTGAAGGAATCTTCTTCAGTGGAAGTTTCTGCGCCATTTTTTGGCTTAAAAAAAGATC 30058 Query 269212 CCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTG 269271 | ||||| || |||||||| || || ||||| ||| || |||||||| ||||| Sbjct 30059 TTTAATGCCTGGTTTAACTTTTTCAAATGAATTAATATCAAGAGACGAAGGATTACATAC 30118 Query 269272 CGACTTCGCTTGTTTATTATTTACT-AATTATCTTTCACACAAACCTTCTCAAGATAGAG 269330 || || ||||||| | |||||| ||| | | | | | ||| || |||| || Sbjct 30119 AGATTTTGCTTGTT--TGCTTTACTCAATGA--TGTAAAATAAATTAGCTAAAGAAGAAG 30174 Query 269331 TATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTAT 269390 | | | ||||| | | ||||||| | |||| ||||||| | | |||||| || Sbjct 30175 TTAATGTTATTATCGCTGAAGCTGTTGAAATTGAAAAAGAATTTATTTCTGAAGCTTTAC 30234 Query 269391 CTATCGATCTTATCGGTATGAATAGCAA 269418 || | || | || || ||||||||||| Sbjct 30235 CTGTTGAATTAATTGGGATGAATAGCAA 30262 >seq1181 Length=100449 Score = 141 bits (156), Expect = 2e-28 Identities = 179/246 (73%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||| | || |||||||| | |||||| || || || Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||| | || |||||| ||||| || || || | || ||| ||||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||||||||| || | ||| || ||||| |||||||| | | |||| | || || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAACA 75086 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGTGTACAGTA 104572 |||| || || || ||||| || | |||||| || || || | |||||| | || | | Sbjct 75087 TCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTTTTAAATTT 75146 Query 104573 TTTATT 104578 ||| || Sbjct 75147 TTTTTT 75152 >seq1314 Length=139336 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | ||| | || ||||| || | |||||| || ||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| |||||||||| || ||| ||||| ||||| || || | || ||| || || Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || || | ||| ||||| ||||||||||| | | ||| || ||| || Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 |||| ||||| || || || || | ||||| || || || | |||||| Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq892 Length=79579 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||| | || |||||||| | |||||| |||||| Sbjct 46894 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 46953 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| |||||||||| || |||||| || || || || || | || ||| || Sbjct 46954 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47013 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| | || || ||||| |||||||| | | ||| || ||| Sbjct 47014 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACATTTTCAATAGAGTCGGAAGCTTCA 47073 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || || || | |||||| || || || | ||| Sbjct 47074 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTACAT 47123 Score = 136 bits (150), Expect = 9e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | |||| ||| | || |||||||| | |||||| |||||| Sbjct 47122 ATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCA 47181 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| |||||||||| || |||||| || || || || || | || ||| || Sbjct 47182 GAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGG 47241 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||||||||| | || || ||||| || ||||| | | ||| || ||| Sbjct 47242 GGAATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47301 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || |||| || || || || || || | |||||| || || || | ||| Sbjct 47302 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151368644627036