Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq1181 98.7 9e-16 seq1038 91.5 1e-13 seq1314 89.7 5e-13 seq892 86.0 6e-12 >seq1181 Length=100449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| ||| || || || | ||| ||||| |||| | || ||||| Sbjct 74907 CCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGAA 74966 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || ||| |||| | ||||||| |||| || | ||||| | |||||||||| Sbjct 74967 AGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGGA 75026 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 || ||||||||||| |||||||| || || || Sbjct 75027 ATTCCTTCTTTGTCTTAAATTTTGGCTTTAAC 75058 >seq1038 Length=46086 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 |||| ||||| |||| || || || || | ||| || ||||||| | || ||||| Sbjct 44071 CTCCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATC-- 44014 Query 94839 TCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | |||||| ||| || | | |||||| | || |||||||||| | |||||| Sbjct 44013 TGAAAGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGG 43954 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 |||||||||||| || || ||||| || || || ||| | | | |||| || Sbjct 43953 AGGAATACCTTCCTTATCTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTC 43894 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | || || ||||||||||| | ||||| ||||| || | ||| Sbjct 43893 TACGTCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACAT 43843 >seq1314 Length=139336 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| ||| ||||| || | ||| |||||||||| | || ||||| Sbjct 38379 CCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAA 38438 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| || || || | | ||| || | || || | ||||| | |||||| ||| Sbjct 38439 AGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGA 38498 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| |||||||||||||| || | | | |||| || || Sbjct 38499 ATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACA 38558 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | || ||||||||||| || | |||||| || || || | ||| Sbjct 38559 TCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACAT 38605 >seq892 Length=79579 Score = 86.0 bits (94), Expect = 6e-12 Identities = 164/242 (68%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 ||||| ||| | | ||||||||| | || || || || || | || ||||| |||| Sbjct 46654 TTAAATTTTCAAAGTCCTCCTCTAAGTCTTAAGACTAAATGGAGTGTTGATTCTTTTTAA 46713 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | || || || | ||| | || || | | |||||| | ||||| | |||| Sbjct 46714 ATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTT 46773 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 | | |||||| ||||||||||||||||| || ||||| || |||||| | | || | Sbjct 46774 TATTAATCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAG 46833 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | ||||| |||||||| || | ||||| || ||||| | | Sbjct 46834 TCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTGACGAAGATTTAC 46893 Query 95006 AT 95007 || Sbjct 46894 AT 46895 Score = 86.0 bits (94), Expect = 6e-12 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| || ||||| |||| ||| || || || | || ||||| |||| | || | Sbjct 47345 TTTACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGT 47404 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | || || | | |||||| | ||||| | ||||| | || Sbjct 47405 AGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAAT 47464 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| ||||||||||||||||| || ||||| || |||||| | | || ||| | Sbjct 47465 CTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAG 47524 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| |||||||| || | ||||| || ||||| | ||| Sbjct 47525 CTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47579 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 |||||| || ||||| |||| ||| || || || | || ||||| |||| | || | Sbjct 47117 TTTACATACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGT 47176 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | || | ||| | || || | | |||||| | ||||| | ||||| | || Sbjct 47177 AGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAAT 47236 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| |||||||||||||| || || ||||| || |||||| | | || ||| | Sbjct 47237 CTGGGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAG 47296 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| |||||||| || | ||||| || ||||| | ||| Sbjct 47297 CTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACAT 47351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448279897458120