Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011
-07-18] 2,017 sequences; 48,799,969 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq1353 214 2e-50
>seq1353
Length=60684
Score = 214 bits (236), Expect = 2e-50
Identities = 405/596 (68%), Gaps = 7/596 (1%)
Strand=Plus/Minus
Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531
|||||| |||||||| ||| || ||||| || || |||||||||||| ||||| ||
Sbjct 30134 CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGT 30075
Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590
|||||| |||||||| ||| ||||| | |||||| || | |||| | || || |
Sbjct 30074 TAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCCACTGA 30016
Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTAT 21650
|||| || || |||| || ||||||||||||||||| | || | | || ||||
Sbjct 30015 AGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTG---TCATTAT 29959
Query 21651 CCAATATCCATTTTTCTGCCCATTTTGCCTTTTC-TTTAATACAATCAATTGTATCAATA 21709
||||||||| ||||||| || |||| |||| |||| | | || | |
Sbjct 29958 TATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA-A 29900
Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769
||||| |||||| | |||||||| |||| |||| | |
Sbjct 29899 GCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAA 29840
Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829
|| |||| ||||| |||||||| || ||||| | |||||| || ||| |||||| |||
Sbjct 29839 TAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCT 29780
Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889
| | || ||| || | |||| || ||| || ||||| || ||||||||
Sbjct 29779 GGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAA 29720
Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949
|| ||||||||||| | | || || ||||| | || ||| ||| || ||| ||| |
Sbjct 29719 GCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCC 29660
Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009
|||||| ||||||| | | ||| | ||| || | ||||||||| ||| | |
Sbjct 29659 CAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCT 29600
Query 22010 TTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTT 22065
||||| ||||| ||| || | ||||||| ||||||| || || ||||| |||||
Sbjct 29599 TTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTT 29544
Score = 132 bits (146), Expect = 5e-26
Identities = 164/223 (74%), Gaps = 1/223 (0%)
Strand=Plus/Minus
Query 21111 TTATAAAAATATTTATTT-AAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt 21169
||||| ||| |||| | |||||||||||| |||| |||||| |||||||||||
Sbjct 30551 TTATATTAATTTTTAAATCAAAAATCAGCATTTAATCTGAAAACTTTATCTTCTTTAGAA 30492
Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229
||||||| ||| ||||| ||| |||| |||||| ||||| || ||||| || ||||||
Sbjct 30491 GACATAACTCCTGATTTTTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCT 30432
Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289
| | |||| ||||| | ||||| || |||| || ||||||| ||| | ||
Sbjct 30431 TAAATACATATCATATCCATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAA 30372
Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332
|| || | || | ||||||||| |||||||||| |||||
Sbjct 30371 CCAAGAGAATACAAAAGTCTATCTGCAACAAATTCTAAATATT 30329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531887389451080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |