Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1353 214 2e-50 >seq1353 Length=60684 Score = 214 bits (236), Expect = 2e-50 Identities = 405/596 (68%), Gaps = 7/596 (1%) Strand=Plus/Minus Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 |||||| |||||||| ||| || ||||| || || |||||||||||| ||||| || Sbjct 30134 CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAAAAAGT 30075 Query 21532 TAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAA 21590 |||||| |||||||| ||| ||||| | |||||| || | |||| | || || | Sbjct 30074 TAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCCACTGA 30016 Query 21591 AGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTAT 21650 |||| || || |||| || ||||||||||||||||| | || | | || |||| Sbjct 30015 AGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTG---TCATTAT 29959 Query 21651 CCAATATCCATTTTTCTGCCCATTTTGCCTTTTC-TTTAATACAATCAATTGTATCAATA 21709 ||||||||| ||||||| || |||| |||| |||| | | || | | Sbjct 29958 TATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA-A 29900 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 ||||| |||||| | |||||||| |||| |||| | | Sbjct 29899 GCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAA 29840 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || |||| ||||| |||||||| || ||||| | |||||| || ||| |||||| ||| Sbjct 29839 TAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCT 29780 Query 21830 GAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTG 21889 | | || ||| || | |||| || ||| || ||||| || |||||||| Sbjct 29779 GGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGAA 29720 Query 21890 GCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTC 21949 || ||||||||||| | | || || ||||| | || ||| ||| || ||| ||| | Sbjct 29719 GCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTCC 29660 Query 21950 CAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCC 22009 |||||| ||||||| | | ||| | ||| || | ||||||||| ||| | | Sbjct 29659 CAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTCT 29600 Query 22010 TTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTT 22065 ||||| ||||| ||| || | ||||||| ||||||| || || ||||| ||||| Sbjct 29599 TTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTT 29544 Score = 132 bits (146), Expect = 5e-26 Identities = 164/223 (74%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 21111 TTATAAAAATATTTATTT-AAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt 21169 ||||| ||| |||| | |||||||||||| |||| |||||| ||||||||||| Sbjct 30551 TTATATTAATTTTTAAATCAAAAATCAGCATTTAATCTGAAAACTTTATCTTCTTTAGAA 30492 Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 ||||||| ||| ||||| ||| |||| |||||| ||||| || ||||| || |||||| Sbjct 30491 GACATAACTCCTGATTTTTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCT 30432 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAA 21289 | | |||| ||||| | ||||| || |||| || ||||||| ||| | || Sbjct 30431 TAAATACATATCATATCCATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAA 30372 Query 21290 CCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATT 21332 || || | || | ||||||||| |||||||||| ||||| Sbjct 30371 CCAAGAGAATACAAAAGTCTATCTGCAACAAATTCTAAATATT 30329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531887389451080