Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq861 333 3e-86 seq1353 228 1e-54 >seq861 Length=133231 Score = 333 bits (368), Expect = 3e-86 Identities = 1165/1797 (65%), Gaps = 50/1797 (3%) Strand=Plus/Plus Query 62070 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 62129 |||||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 62130 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGA 62189 | | || ||| || || | | ||| ||| | || || || | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 62190 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 62246 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 62247 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62306 | |||||| || |||| | |||||| | | | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTA 47381 Query 62307 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 62366 ||||| || || ||||| |||||||| |||||| || | | |||||| | Sbjct 47382 ATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTT 47441 Query 62367 GTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTT 62426 || || | |||| ||||| ||||| | || ||| |||||| ||||||| || ||| Sbjct 47442 GTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTA 47501 Query 62427 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 62486 || ||||| |||||||| || | || | | |||||| | ||| ||| || |||||| Sbjct 47502 GAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTA 47561 Query 62487 TCTTTTAGAGGTTCCCAATT----CCAAAGATCCGACGGT-ACAACNNNNNNNNNNNNNN 62541 ||||| || ||||||| ||| | | || | | | || Sbjct 47562 CTTTTTAAAGAATCCCAATCATAACCACATTTATGAGGTTTATAATTCCATAAATCAAAC 47621 Query 62542 NTTGTAGAAT--ACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTT 62599 || ||| ||| | | || || |||||| | | | || ||| || || Sbjct 47622 ----TACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTT 47677 Query 62600 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62659 ||| | ||| || || | || || |||||||| ||||| ||||| || | Sbjct 47678 TATAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTC 47737 Query 62660 ATTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCCG 62718 ||| | ||| |||| || || || | | | |||||| || || || || | Sbjct 47738 ATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAG 47796 Query 62719 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62778 | | ||||| |||||| || || |||||||||||| || |||| || | | || | | Sbjct 47797 CAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAG 47856 Query 62779 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGA 62835 ||| ||||| ||||| ||| |||| | | || | || |||| ||| ||||| Sbjct 47857 GAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATT--TTTGA 47914 Query 62836 CCACATCCTTCAGTTTGA-------GAAA-ATCAAATCGCCC-ATCTATTACAA-ACATG 62885 | || | || ||| |||| || || | | |||| |||| | || Sbjct 47915 T-ATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAAATT 47973 Query 62886 TTCA--AGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62943 || | | | || ||| |||| |||||| || || | |||| | | ||||| | Sbjct 47974 TTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAA 48033 Query 62944 TTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTT 63003 | || ||||| || | ||| || | ||||| || ||||||| || |||||| ||| Sbjct 48034 TAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTC 48093 Query 63004 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 63063 | ||||| ||||| ||||| | || | ||||| |||||||| || | ||| || |||| Sbjct 48094 TATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAA 48153 Query 63064 TCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATA 63123 | ||| ||| | ||| || || ||| | | | | | | ||||||||| ||| Sbjct 48154 TATCTTGCCAAAGTTCTCTGGCTTTAATTCTTTTTCTTCCTTTTCCTTCTCTTTCATATT 48213 Query 63124 GTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCG 63183 || | | ||| || || ||||||||||||| || || |||||||| | Sbjct 48214 TCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATTAG 48273 Query 63184 GACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCC 63243 | |||||||| | ||| | | | || | | |||| | ||||||| | ||||||||||| Sbjct 48274 GGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAATCC 48333 Query 63244 AAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGA 63302 | | || ||| || |||||||| | ||| || || || ||||| ||| ||||| | Sbjct 48334 ATAACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTAAT 48392 Query 63303 TCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGC 63362 | | || | | || ||||| |||||| |||||||| ||||| || | ||| Sbjct 48393 TATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTTTT 48452 Query 63363 CGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGA 63422 | |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| ||| Sbjct 48453 CTTTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCGGA 48512 Query 63423 ATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTA 63482 ||||| || || || ||||| || || ||||| || | | | |||||| Sbjct 48513 ATAATTCCATTAGAATGTCCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATATTA 48572 Query 63483 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63542 || ||| | ||||||||| || || | ||||| ||||| || ||| ||| || || Sbjct 48573 TGAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAATGTA 48632 Query 63543 TCATAGATACCCTCTATGCTATCA-TCGATCATGTTAAGTAGAAAACAGCTAGACATTT- 63600 ||||| || || || || |||| || | ||| | | || ||||| ||| ||| | Sbjct 48633 TCATATATGCCTTCAATTGAATCACTCTA-CATAGTCAATAAGAAACAACTACTCATCTA 48691 Query 63601 --GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 63658 ||| | || ||| || |||||||| ||||||| || || || ||||||||||| Sbjct 48692 AGGGTTTGG---AGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTTTC 48748 Query 63659 AGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATA--TCCCATTGATGAATTCCTAC 63715 | | || |||||| | ||| ||| || | | |||| || | || || || |||| Sbjct 48749 ACTCATTAAATTGTAAGTTCTGAAT-GC--ACTTTATAAGTCTCTTTTGTGGATACCTAT 48805 Query 63716 TGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAA 63775 | || | ||||||||| | |||||||| || || || || ||||| || | Sbjct 48806 GGAAACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAAAG 48865 Query 63776 GTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63832 || ||| |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48866 ATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 228 bits (252), Expect = 1e-54 Identities = 499/741 (67%), Gaps = 6/741 (1%) Strand=Plus/Minus Query 33177 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 33236 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 33237 CGCATCTGTTATAATAGATCTAACGGTTTCTTCA-CTCGGTGGATGCA-ATAAATGTTTA 33294 || || | |||||| |||| ||||| | || | | | || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 || |||||| || ||||| || | || |||||||| |||| ||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || | || ||||||| | |||||||||||||| |||| ||| |||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGCGCAGAAACTTCCA 30020 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 |||||||||||||| | || ||||| |||| | || | || | | | Sbjct 30019 CTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATTA 29960 Query 33475 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 | || ||||| ||| |||||| | || || || |||| ||| || || Sbjct 29959 TTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACAA 29900 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 || ||||| ||| | | |||||||||| |||||| | ||||||||| || || | | | Sbjct 29899 GCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGAA 29840 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 || |||| |||||||| ||||| || || || | |||||| |||||| ||| || || Sbjct 29839 TAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTCT 29780 Query 33655 GTAATCTGTACTTCTGTACA-AAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 | ||| | ||||| ||| |||| ||| || |||||||| || ||||| || Sbjct 29779 GGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTGA 29721 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATT 33773 ||||||||||| || | |||| || ||||| | | | ||| | || | | | | Sbjct 29720 AGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTTC 29661 Query 33774 CCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGC 33833 |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | | Sbjct 29660 CCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTTC 29601 Query 33834 CTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGG 33893 ||||| ||||| | ||| || | || ||||| |||||||| ||||||||||| ||||| Sbjct 29600 TTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTGG 29541 Query 33894 ATTTGGTGCAAGGATGGGTTC 33914 |||| | ||| || ||||| Sbjct 29540 ATTTTCTTAAAGAATTGGTTC 29520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 154/219 (70%), Gaps = 13/219 (6%) Strand=Plus/Minus Query 32960 AAAAGTCAACATCTAAA--GAAAAATGATTATCTTCTTGAGA---CATAACTCCCATTTT 33014 |||| ||| ||| ||| ||||| | |||||||||| ||| ||||||||| ||| Sbjct 30532 AAAAATCAGCATTTAATCTGAAAACT--TTATCTTCTTTAGAAGACATAACTCCTGATTT 30475 Query 33015 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33074 || |||||||| || | ||||| || |||||||||||||||| | |||| | || Sbjct 30474 TTAATATTCACCAACTCTCTTTTCAAAGAAATTAGTTTTTCCTTAAATACATATCATATC 30415 Query 33075 CATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAA 33134 ||| | ||||| || || | |||| | | |||| | | || | |||| ||| Sbjct 30414 CATCCACTCAAAAGGGTTTTTTGAATTAAATAATTTTGGATAACCAA---GAGAATACAA 30358 Query 33135 ---TCTATCCGCGACGAATTCTATATATGTTTTCATCAT 33170 |||||| || || ||||||| |||| ||||||||| Sbjct 30357 AAGTCTATCTGCAACAAATTCTAAATATTCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622931493943720