Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq892 116 4e-21 seq1181 107 2e-18 seq1038 96.9 3e-15 >seq892 Length=79579 Score = 116 bits (128), Expect = 4e-21 Identities = 200/287 (70%), Gaps = 14/287 (5%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||| || | || || ||||||||||| |||||| | ||||| | || | ||| | | Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | |||||| || || ||||||||||| || || || ||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||| || | || || ||| || | ||||| | |||| | ||||| || Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA-----AAAATAT 27003 ||| |||||||||| || ||||| | ||| | ||||||||||||||| ||||| | Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGGACTTTGAAAATTT 46656 Query 27004 GATTAGTTTGAATCAAATCATAAAAATCGTTATAACAAAATCTAATT 27050 ||| ||| ||||| ||||||| ||||| ||||| ||||| Sbjct 46655 AATT--TTTTTATCAA---ATAAAAA---ATATAATAAAAT-TAATT 46618 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||| || | || || ||||||||||| |||||| | ||||| | || | ||| | Sbjct 47580 AATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTC 47521 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||| | || || | |||||| || || ||||||||||| || || || ||| | Sbjct 47520 CGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTA 47461 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 | ||||||| || | || || ||| || | ||||| | |||| | ||||| || Sbjct 47460 ATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAA 47401 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| |||||||||| || ||||| | ||| ||||| | ||||| || Sbjct 47400 TATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||| || | || || ||||||||||| |||||| | ||||| | || | ||| | | Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | |||||| || || || |||||||| || || || ||| || Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||| || | || || ||| || | ||||| | |||| | ||||| || Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| |||||||||| || ||||| | ||| ||||| | ||||| || Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 46897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||| || | || || ||||||||||| |||||| | ||||| | || | ||| | | Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | |||||| || || || |||||||| || || || ||| || Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||||| || | || || ||| || | ||||| | |||| | ||||| || Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| |||||||||| || ||||| | ||| ||||| | ||||| || Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47125 >seq1181 Length=100449 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26762 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGA 26821 ||| |||||| || | || || ||||||||||| || ||| | ||||| | || | || Sbjct 75140 AAAAAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGA 75081 Query 26822 ATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCC 26881 || ||| | || || | || ||| || ||| ||||||||||| || ||||| Sbjct 75080 GGCATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCC 75021 Query 26882 CGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGA 26941 ||| || ||||||| || | | ||| ||| || | ||||||| |||| | || Sbjct 75020 AGATTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGA 74961 Query 26942 CTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||| |||||||||| ||| ||||| | || ||||| | |||||||| Sbjct 74960 TTACAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq1038 Length=46086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 183/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 26736 CTAAATTATATAAGTACTTTTTAGTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACT 26795 ||||||| ||| | || ||| | | ||| |||||| || | ||||| ||||| |||||| Sbjct 43812 CTAAATT-TATTATTA-TTTAAAATAAAAAAAAATGTAAATTTTTGTTAAAACCTTAACT 43869 Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 |||||| | || || | || ||||| | || | || || | || ||| ||| Sbjct 43870 GGAAAAACTATTACATTAGACGTAGAAGCTTCTGATTCAATTGAAAACGTAAAAGCCAAG 43929 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 ||| || || ||||| || ||||| ||| || ||||| | |||| || || ||| || Sbjct 43930 ATTTAAGATAAGGAAGGTATTCCTCCAGATTAATAAAGATTAATTTTCGCAGGAAAATAA 43989 Query 26916 CTCGAAGATGATAGAA-AC-GTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATC 26973 | ||||||| |||| || ||| || || || ||| |||| || || ||| ||||| Sbjct 43990 TTAGAAGATGGAAGAACACTTTCA--GATTACAATATTTAAAAGGAGTCAACTCTCCATT 44047 Query 26974 TGGTCCTGAGACTTAGAGGAGGA 26996 | || | ||| | ||||| ||| Sbjct 44048 TAGTTTTAAGATTAAGAGGCGGA 44070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478650331724240