Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1353 122 2e-22 >seq1353 Length=60684 Score = 122 bits (134), Expect = 2e-22 Identities = 405/619 (65%), Gaps = 11/619 (2%) Strand=Plus/Plus Query 22140 CGAAATTGATATTTCCACTGATAAGACGGATTGGCCAAAACTTACAGAAAACGAACAACA 22199 |||||||||| ||| ||| || |||||| || | | || || ||| ||| Sbjct 29627 CGAAATTGATCTTTATTAAGATTTGAAAGATTGGGAAAGATTGACTGATGGCGAGAGACA 29686 Query 22200 TTTTATCAAATATATTCTAGCATTCTTTGCTACCGCAGACGGTATAGTTTTTGAGAATCT 22259 ||||| || ||| |||| ||||| ||||| | |||| || || ||| | || ||| | Sbjct 29687 CTTTATTAAGTATGTTCTTGCATTTTTTGCAGCTTCAGATGGAATTGTTCTAGAAAATTT 29746 Query 22260 AG-TGACTAATTT-TGCATCTGAAATTCAATACCCAGAGGCCAGATGTTTCTATGGTGTG 22317 || ||| |||||| || | |||| || || ||||| || ||| ||||||||| | Sbjct 29747 AGCTGAATAATTTATG--TGTGAAGTTTAAATTCCAGAAGCAAGAGCTTTCTATGGATTT 29804 Query 22318 CAAATGATGATTGAAAATGTTCACGCGGAAACATATTCTATGATGCTACAGTCACTCGTA 22377 |||| || |||||| |||| | ||||| |||||| | | || | | || Sbjct 29805 TAAATAGCTATGGAAAATATTCATTCCGAAACTTATTCTTTATTAATAGATACTTATATA 29864 Query 22378 GAAGATAAAGACGAACAAC-GAAACTTATTCCGCGCGATTCGCACCATTCAATCAATTAA 22436 ||||| | | ||| || | ||| || || || | |||| ||| || Sbjct 29865 AAAGATGATAATGAAAAAGAGTTTCTTTTTAAA-GCTTGTCTAAATATTCCTGTAATAAA 29923 Query 22437 GAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATT-CGCGGAACGTC 22495 || || || | ||||| | |||||||| || ||| || | ||| ||| || Sbjct 29924 TAAAAAAGCTTAATGGGCTTTAAAATGGATTAATAAT-AATGACAATTTCGCTTCTCGAT 29982 Query 22496 TTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTT 22555 | |||||||||| | ||||||| || ||||| |||| || || || || |||| Sbjct 29983 TAGTTGCATTTGCAGCTATTGAAGGAATCTTCTTCAGTGGAAGTTTCTGCGCCATTTTTT 30042 Query 22556 GGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAG 22615 |||| |||||| | | | ||||| ||| |||| ||||||||||| ||||| ||| Sbjct 30043 GGCTTAAAAAAAGATCTTTAATGCCTGGTTTAACTTTTTCAAATGAATTAATATCAAGAG 30102 Query 22616 ATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCATAAAC 22675 | || || | ||||| |||||||| ||| |||| || | ||| || | | ||||| Sbjct 30103 ACGAAGGATTACATACAGATTTTGCTTGTTTGCTTTA-CTCAATGATGTAA--AATAAAT 30159 Query 22676 TTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTATTTA 22735 | | | ||| || || |||||| | | || |||||| ||||| ||||| Sbjct 30160 TAGCTAAAGAAGAAGTTAATGTTATTATCGCTGAAGCTGTTGAAATTGAAAAAGAATTTA 30219 Query 22736 TTTGCGAGGCGTTACCAGT 22754 ||| || || ||||| || Sbjct 30220 TTTCTGAAGCTTTACCTGT 30238 Score = 98.7 bits (108), Expect = 3e-15 Identities = 121/162 (75%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 22791 ATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATA- 22849 |||| | |||||||||||||| | || || ||| || |||||| |||| ||||| Sbjct 30330 ATATTTAGAATTTGTTGCAGATAGACTTTTGTATTCTCTTGGTTATCCAAA--ATTATTT 30387 Query 22850 ACGTCGTTAATCCATTT-GAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 | || || || ||| || |||||||| | || | || ||||||| || |||||| Sbjct 30388 AATTCAAAAAACCCTTTTGAGTGGATGGATATGATATGTATTTAAGGAAAAACTAATTTC 30447 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || ||||| |||||||||||||| ||||| |||| |||||| Sbjct 30448 TTTGAAAAGAGAGTTGGTGAATATTAAAAATCAGGAGTTATG 30489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303319917677294