Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1181 116 3e-21 seq1038 107 2e-18 seq892 104 2e-17 >seq1181 Length=100449 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| |||||| || | || || ||||||||||| || ||| | || || | || || || Sbjct 75140 AAAAAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGA 75081 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 ||| ||| | || || | || ||| || ||| ||||||||||| || ||||| Sbjct 75080 GGCATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCC 75021 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||| || | ||||| || | | ||| || || | ||||||| ||||| | || Sbjct 75020 AGATTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGA 74961 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| || ||| |||||||||| || | |||||||| || ||||| |||||||| Sbjct 74960 TTACAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq1038 Length=46086 Score = 107 bits (118), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| |||||| || | ||||| ||||| |||||||||||| | ||||| | || || || Sbjct 43836 AAAAAAAATGTAAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGACGTAGA 43895 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 || || | || || | || ||| |||||| || || ||||| || ||||| Sbjct 43896 AGCTTCTGATTCAATTGAAAACGTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTCC 43955 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-AC-GTCAGC 24161 ||| || | ||| | |||| || || || || | ||||||| |||| || ||| Sbjct 43956 AGATTAATAAAGATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCA-- 44013 Query 24162 GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| || ||| |||| || || || | |||||||| |||||||| ||||| ||| Sbjct 44014 GATTACAATATTTAAAAGGAGTCAACTCTCCATTTAGTTTTAAGATTAAGAGGCGGA 44070 >seq892 Length=79579 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || ||||||||||| |||||| | || || | || || || || | Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | |||||| || || ||||||||||| || || || ||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| || | || || || || | ||||| | |||| | || || || Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACT 24220 ||| |||||||||| ||| | |||||||| |||||| | ||||||||||| Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGGACT 46666 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||| || | || || ||||||||||| |||||| | || || | || || || || Sbjct 47580 AATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTC 47521 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||| | || || | |||||| || || ||||||||||| || || || ||| | Sbjct 47520 CGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTA 47461 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 | | ||||| || | || || || || | ||||| | |||| | || || || Sbjct 47460 ATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAA 47401 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||||| || | |||||||| || ||||| ||||| || Sbjct 47400 TATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || ||||||||||| |||||| | || || | || || || || | Sbjct 47123 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47064 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | |||||| || || || |||||||| || || || ||| || Sbjct 47063 GACTCTATTGAAAATGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47004 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| || | || || || || | ||||| | |||| | || || || Sbjct 47003 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46944 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||||| || | |||||||| || ||||| ||||| || Sbjct 46943 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 46897 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||| || | || || ||||||||||| |||||| | || || | || || || || | Sbjct 47351 ATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 47292 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| | || || | |||||| || || || |||||||| || || || ||| || Sbjct 47291 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGATAAAGAAGGTATTCCCCCAGATTAA 47232 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 | ||||| || | || || || || | ||||| | |||| | || || || Sbjct 47231 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 47172 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||||| || | |||||||| || ||||| ||||| || Sbjct 47171 ATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429925431232635