Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1314 100 2e-16 seq1038 86.0 5e-12 >seq1314 Length=139336 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 |||||| ||||||| || ||||| | || |||||||||||||| | || || | Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || | ||| | | ||||| ||||||| || || ||||| | || ||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 | |||||||||||| || || ||| |||||||||| | || ||| | | ||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||| |||| || || ||| | ||| |||| |||||||| ||||||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGG 38379 >seq1038 Length=46086 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||||||| |||||||||| ||||| | || |||||||| ||||| | || || || Sbjct 43839 AAAAATGTAAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGA--CGTAGA- 43895 Query 115342 CAGC----GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCG 115397 ||| || | ||| | | |||||| || ||| ||||| ||||| | || Sbjct 43896 -AGCTTCTGATTCAATTGAAAACGTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTC 43954 Query 115398 TTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCG 115457 ||| | ||||| | |||| || || ||| |||||||||||| | ||| | | | Sbjct 43955 CAGATTAATAAAGATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAG 44014 Query 115458 ATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 |||| || ||| |||| ||||| ||| | ||| | || || ||||| |||| ||| Sbjct 44015 ATTACAATATTTAAAAGGAGTCAACTCTCCATTTAGTTTTAAGATTAAGAGGCGGA 44070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425333544114040