Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2017 131 1e-25 seq1314 123 2e-23 seq1181 113 3e-20 seq892 107 1e-18 seq1038 98.7 7e-16 >seq2017 Length=8329 Score = 131 bits (144), Expect = 1e-25 Identities = 90/102 (88%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 |||| ||||||||||||||| ||||||| ||||||||||||||||||||| || | Sbjct 1553 TTATTCTAAGCCCGTTCCCTTAGCTGTGGGTTCGCTAGATAGTAGATAGGGACAGTGGGA 1612 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| ||||||| |||||||||||||||||||||||||||| Sbjct 1613 ATCTCATTAATCCATTCATGCGCGTCACTAATTAGATGACGA 1654 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||||||||||| |||||| || | |||||||||||||||||||||| || Sbjct 3537 CTCTTTTCAAAGTTCTTTTCATCTTTCCTTCGCAGTACTTGTTCGCTATCGGTCTCCCGT 3596 Query 20009 TAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 3597 GAATATTTAGCTTTA 3611 >seq1314 Length=139336 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| || | ||| |||||||| |||||| ||||||| ||||||||||||||| Sbjct 38378 ACCTCCTCTTAATCTCAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGA 38437 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | |||| ||||||| ||| || || || || || | || || ||| | || Sbjct 38438 AAGAGTTCTGCCGTCTTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGG 38497 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| ||||||| ||| ||||| | | | ||| | |||||| Sbjct 38498 AATTCCTTCCTTGTCTTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAAC 38557 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| ||||| ||||| || || || ||||| ||||| || | ||| || Sbjct 38558 ATCTAAAGTAATGGTTTTTCCTGTTAAAGTTTTAACGAAAATTTACATTTT 38608 >seq1181 Length=100449 Score = 113 bits (124), Expect = 3e-20 Identities = 167/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| ||||| || | ||| || ||||| |||||| || |||| |||||||||||| || Sbjct 74906 ACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGA 74965 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | | | || || |||| ||||||||||||||| || | || || ||| | || Sbjct 74966 AAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGG 75025 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | |||||||||| | ||| |||| || || ||||| | | | ||| |||| Sbjct 75026 AATTCCTTCTTTGT-CTTAAATTTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAA 75084 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 | ||||| || || |||||||| || || ||||| ||||| || | ||| |||| Sbjct 75085 CATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACATTTTTT 75138 >seq892 Length=79579 Score = 107 bits (118), Expect = 1e-18 Identities = 167/236 (71%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| || | ||| || ||||| || || || |||| ||||||||| |||| Sbjct 47351 TACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATATTGTAGTCAG 47410 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | | | |||| ||||||| |||||| || || || || | || || ||| | || Sbjct 47411 AAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGG 47470 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCA 38267 | | |||||||||| | || |||| || || || || | | || || | |||| Sbjct 47471 GAATACCTTCTTTGT-CTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCA 47529 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTA 38323 || ||||| || || ||||| || || || ||||| ||||| || | ||| |||| Sbjct 47530 ACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTATTTA 47585 Score = 89.7 bits (98), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38106 AACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCG 38165 || || ||||| || || || |||| ||||||||| ||||| | | | | |||| Sbjct 46684 AAGACTAAATGGAGTGTTGATTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCT 46743 Query 38166 TCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCC 38225 ||||||| |||||| || || || || | || || ||| | ||| | |||||||||| | Sbjct 46744 TCTAATTATTTTCCTGCGAAGATAAGTCTTTATTAATCTGGGGGAATACCTTCTTTGT-C 46802 Query 38226 ATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 || |||| || || || || | | || || | |||||| ||||| || || || Sbjct 46803 TTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGT 46862 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||| || || || ||||| ||||| || | ||| Sbjct 46863 TTTTCCGGTTAATGTTTTGACGAAGATTTACAT 46895 >seq1038 Length=46086 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| || | || || ||||| ||||| |||||||| |||||||||||| || Sbjct 44069 CCGCCTCTTAATCTTAAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAA 44010 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | | || ||||||| |||||| || || |||| | || || ||| | || Sbjct 44009 AGTGTTCTTCCATCTTCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGA 43950 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGC-TTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| || | | ||| | || || || || || | | | ||| | ||| || Sbjct 43949 ATACCTTCCTTAT-CTTAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTAC 43891 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 ||||||||||||||||| || || |||||||| || || || | ||| |||| Sbjct 43890 GTCTAATGTAATAGTTTTTCCAGTTAAGGTTTTAACAAAAATTTACATTTTTT 43838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334938966265127