Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq861 361 7e-95 seq1353 241 2e-58 >seq861 Length=133231 Score = 361 bits (400), Expect = 7e-95 Identities = 1174/1799 (65%), Gaps = 54/1799 (3%) Strand=Plus/Plus Query 61925 TAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGAT 61984 |||||||||||| || | |||||||||||| || |||| ||||| ||||| | |||| Sbjct 47142 TAAAAATGCATAGAAGTCATTTTGGAATAACTAGGTTCTGAAATATGAATATTAAGAGAT 47201 Query 61985 TGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGA 62044 | | || ||| || || | | ||| ||| | || ||||| | |||||||| | Sbjct 47202 TAAGATTAATCAATAAATGGACTCCTTGACAAAGCTAAATTAATAATGGCCTTTTGTGAA 47261 Query 62045 ATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGT-TTGTATTC--TGA 62101 | |||||||| ||||||||||| ||| | | ||| |||| | || |||| | | Sbjct 47262 ACTTCCCAAACAGTTTTATAAATATCCTTCAAACTTTCAGGAATTTCTTATATTTATTAA 47321 Query 62102 ATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCG 62161 | |||||| || |||| | |||||| | | | ||||| ||| | | Sbjct 47322 ACAGATCCATTATAAGCCAGTAGTTAATTCTTAACACTAGGAGTCCATTGATTTATTTTA 47381 Query 62162 GTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGA 62221 ||||| || || ||||| |||||||| |||||| || | | |||||| | Sbjct 47382 ATTAAATCTTAAACAAGATGAGGATTAACACAAACAAATTCACCCGCGAGTACTCTTCTT 47441 Query 62222 GTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTT 62281 || || | |||| ||||| ||||| | ||| ||| |||||| ||||||| || ||| Sbjct 47442 GTATATAAATTAGAAGTATAAGGTTCAAAAGATTCACAATTTCCTAAAATTTAAGAAGTA 47501 Query 62282 GATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTA 62341 || ||||| |||||||| || | || | | |||||| | ||| ||| || |||||| Sbjct 47502 GAAGCAGTTGGCATAGGAGCTATTAAAAGAGAATTTCTCATACCATATTTTTATATTTTA 47561 Query 62342 TCTTTTAGAGGTTCCCAATT----CCAAAGATCCGACGGT-ACAACNNNNNNNNNNNNNN 62396 ||||| || ||||||| ||| | | || | | | || Sbjct 47562 CTTTTTAAAGAATCCCAATCATAACCACATTTATGAGGTTTATAATTCCATAAATCAAAC 47621 Query 62397 NTTGTAGAAT--ACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTT 62454 || ||| ||| | | || || |||||| | | | || ||| || || Sbjct 47622 ----TACAATTTACCCTAAGAAGCAGGGGAGCCTACAAAAGAGGCATAACATCCATCTTT 47677 Query 62455 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62514 ||| | ||| || || | || || |||||||| ||||| ||||| || | Sbjct 47678 TATAGCCAATTCCATGGATGCTTCACAAGCTCCATAATAAATAGTTTCAAAGATTTTTTC 47737 Query 62515 ATTTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA-ATAAACGCGTCTG 62573 ||| | ||| |||| || || || | | | |||||| || || || || | Sbjct 47738 ATTGATTTCTAAGGCTTTTTCACTTTCGAAAGAA-ACTTTAAGCTTCATGAAGGCATCAG 47796 Query 62574 CTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTG 62633 | | ||||| |||||| || || |||||||||||| || |||| || | | || | | Sbjct 47797 CAAGTCCTTAAACACCTATTCCAATAGGTCTATGTTTCATATTGGATAATCTGGCCTAAG 47856 Query 62634 GAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGA 62690 ||| ||||| ||||| ||| |||| | | || | || |||| ||| ||||| Sbjct 47857 GAACTGGATAGTAATTTTCATCAATAACTCTGTTTAAGTTAAAAGTGACTATT--TTTGA 47914 Query 62691 CCACATCCTTCAGTTTGA-------GAAA-ATCAAATCGCCC-ATCTATTACAA-ACATG 62740 | || | || ||| |||| || || | | |||| |||| | || Sbjct 47915 T-ATTTCGTACAATTTATTATATTCGAAATATGAATTTTCATTATCTTCAACAACAAATT 47973 Query 62741 TTCA--ATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTA 62798 || | | | || ||| |||| |||||| || || | |||| | | ||||| | Sbjct 47974 TTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTATATTCAA 48033 Query 62799 TTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTT 62858 | || ||||| || | ||| || | || || || ||||||| || |||||| ||| Sbjct 48034 TAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTACTTTTTC 48093 Query 62859 TGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAA 62918 | ||||| ||||| ||||| | || | ||||| |||||||| || | ||| || |||| Sbjct 48094 TATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTCTATTTAAGAATCAATAA 48153 Query 62919 TCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTT--TTCTCTTTCGTA 62976 | ||| ||| | ||| || || ||| | ||| | || || ||||||||| || Sbjct 48154 TATCTTGCCAAAGTTCTCTGGCTTTAATTCTT--TTTCTTCCTTTTCCTTCTCTTTCATA 48211 Query 62977 TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATC 63036 | || | | ||| || || ||||||||||||| | || |||||||| Sbjct 48212 TTTCTCGTAGAGTTTTTCAAATTCTTCTCCCCAAACATCAGGTAAACCTAAACATTCATT 48271 Query 63037 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63096 || |||||||| | ||| | | | || | | |||| | ||||||| | ||||||||| Sbjct 48272 AGGGCACATCAAAGTCCAATGTTCATCTGCAATAACTCTTCTCATAAAAATATCAGGAAT 48331 Query 63097 CCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAA 63155 ||| | || ||| || |||||||| | ||| || || || ||||| ||| ||||| | Sbjct 48332 CCATAACGC-ATAGAAAAGATCTCTTGCTCTTTGCTCTTCTTTTCCATGATTTTTTTTTA 48390 Query 63156 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63215 | | || | | || ||||| |||||| |||||||| ||||| || | ||| Sbjct 48391 ATTATAAAAAATCGAAAACATCAGCATGCCAAGGTTCCAAATATATAGCAAATGATCCTT 48450 Query 63216 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63275 | |||| ||||| | |||| ||||| || || | |||| | ||| | ||||| | Sbjct 48451 TTCTTTTGCCACCTCCTTAGTCTACATATCTGGCTGTATCATTAAACACTTTTAACATCG 48510 Query 63276 GAATAATACCATT-GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 ||||||| ||||| | |||| ||||| || ||| ||||| || | | | ||| Sbjct 48511 GAATAATTCCATTAGAATGT-CCATTAGTTCCTCTAATATAACTATCTTAAGATCTTATA 48569 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394 ||| || ||| | ||||||||| || || | ||||| ||||| || ||| ||| || Sbjct 48570 TTATGAACTGAAACACCTATTCCTCCCGCACTCTTAGATATTAAAGCACATTATTTCAAT 48629 Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454 |||||||| ||||| || || |||| | ||| | | || ||||| ||| ||| Sbjct 48630 GTATCATATATGCCTTCAATTGAATCACTCTACATAGTCAATAAGAAACAACTACTCATC 48689 Query 63455 T---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTT 63511 | ||| | || ||| || |||||||| ||||||| || ||||| ||||||||| Sbjct 48690 TAAGGGTTTGG---AGATCCTGCGTTAAATAAAGTAGGAGTTGCATGAGTGAACCATTTT 48746 Query 63512 TCAGAAAGTAGATTGTACG-TCTCAATAGCTGAGTCTATA--TCCCATTGATGAATTCCT 63568 ||| | || |||||| | ||| ||| || | | |||| || | || || || ||| Sbjct 48747 TCACTCATTAAATTGTAAGTTCTGAAT-GC--ACTTTATAAGTCTCTTTTGTGGATACCT 48803 Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 | | || | ||||||||| | |||||||| || || || || ||||| || Sbjct 48804 ATGGAAACTCTCATTAACATAGTTTAGGGTCTTTCCACAATTTTTCCGTGAATTTTTAAA 48863 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 | || ||| |||| ||||| || ||||||||| ||| || | | | |||| ||| || Sbjct 48864 AGATAAGATCTTTCTAAAGTCTTGAAACCAAAAAAGTCATAAGTATAATCTCTTTCATA 48922 >seq1353 Length=60684 Score = 241 bits (266), Expect = 2e-58 Identities = 504/742 (68%), Gaps = 8/742 (1%) Strand=Plus/Minus Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 |||||| || || | || ||| || | ||| ||| || |||||||| |||||| || Sbjct 30257 ATTCATCCCAATTAATTCAACAGGTAAAGCTTCAGAAATAAATTCTTTTTCAATTTCAAC 30198 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCA-CTCGGTGGATACA-ATAAATGTTTA 32651 || || | |||||| | ||| ||||| | || | | | || | || || Sbjct 30197 AGCTTCAGCGATAATAACATTAACTTCTTCTTTAGCTAATTTATTTTACATCATTGAGTA 30138 Query 32652 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 32711 || |||||| || ||||| |||| || |||||||| |||||||| || ||| Sbjct 30137 AAG--CAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTAATTCATTTGAA 30080 Query 32712 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCC 32770 || || | || ||||||| | |||||||||||||| |||| |||| || ||| Sbjct 30079 AAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGG-CGCAGAAACTTCC 30021 Query 32771 AGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT 32830 | ||||| |||||||| | || ||||| |||| | || | || | | | Sbjct 30020 ACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCGAAATTGTCATT 29961 Query 32831 GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTAT 32890 | || ||||| ||| |||||| | || || || |||| ||| || | Sbjct 29960 ATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACAGGAATATTTAGACA 29901 Query 32891 AGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACT 32950 ||| ||||| ||| | | |||||||||| |||||| | ||| ||||| || || | | Sbjct 29900 AGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGTATCTATTAATAAAGA 29841 Query 32951 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTC 33010 ||| |||| |||||||| ||||| || || |||| |||||| ||||| ||| || || Sbjct 29840 ATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATAGAAAGCTCTTGCTTC 29781 Query 33011 GGTAATCTGTACTTCTGTACA-AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 | ||| | ||||| ||| |||| ||| ||||||||||| || ||||| || Sbjct 29780 TGGAATTTAAACTTCAC-ACATAAATTATTCAGCTAAATTTTCTAGAACAATTCCATCTG 29722 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 33129 ||||||||||| || | |||| || ||||| | | | ||| | || | | | | Sbjct 29721 AAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCCATCAGTCAATCTTT 29662 Query 33130 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 33189 |||||| || | ||||| | | | ||| | ||| || ||||||||||||| || | Sbjct 29661 CCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCCAAAATGAAGCGAGTT 29602 Query 33190 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTG 33249 | ||||| ||||| | ||| || | || ||||| ||||| || ||||||||||| |||| Sbjct 29601 CTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACATAACAAATCTGTTTG 29542 Query 33250 GATTTTTTGCAAGGATTGGTTC 33271 |||||| | ||| |||||||| Sbjct 29541 GATTTTCTTAAAGAATTGGTTC 29520 Score = 82.4 bits (90), Expect = 1e-10 Identities = 134/191 (70%), Gaps = 9/191 (5%) Strand=Plus/Minus Query 32343 TTGTCTTCTTGAGA---CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAA 32399 || ||||||| ||| ||||||||| ||||| |||||||| || | ||||| || Sbjct 30506 TTATCTTCTTTAGAAGACATAACTCCTGATTTTTAATATTCACCAACTCTCTTTTCAAAG 30447 Query 32400 AAATTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTA 32459 ||||||||||| |||| | |||| | ||||| | || || || || | |||| Sbjct 30446 AAATTAGTTTTTCCTTAAATACATATCATATCCATCCACTCAAAAGGGTTTTTTGAATTA 30387 Query 32460 TAAAtttttttAAATCCCAATTCAGAAATCAA---TCTATCTGCGACAAATTCTATATAT 32516 | | |||| | | || | |||| ||| ||||||||| |||||||||| |||| Sbjct 30386 AATAATTTTGGATAACCAA---GAGAATACAAAAGTCTATCTGCAACAAATTCTAAATAT 30330 Query 32517 GTTTTCATCAT 32527 ||||||||| Sbjct 30329 TCTTTCATCAT 30319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633616024553200