Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1181 116 3e-21 seq892 111 1e-19 seq1314 107 2e-18 seq1038 82.4 7e-11 >seq1181 Length=100449 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || || || || || || |||||| | ||||| | || || ||| | Sbjct 75137 AAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGC 75078 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 || || | || || | || |||| |||| | | ||||||||||| ||||| || Sbjct 75077 ATCCGATTCAATTGAA--AATGTTAAAGCCAAAATTTAA-GACAAAGAAGGAATTCCTCC 75021 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || | | |||| |||||||| ||| |||| ||||||| | ||| | || Sbjct 75020 AGATTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGA 74961 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| ||||||||||||| || |||||||| | || |||||||||| Sbjct 74960 TTACAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGG 74907 >seq892 Length=79579 Score = 111 bits (122), Expect = 1e-19 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||| |||| || || || || || ||||| ||| | ||||| | || || || | || Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| |||| || |||| |||| |||| || ||||||||||| ||||| || || Sbjct 46835 GACTCTATTGAAAACGTCA---AAGCTAAAA-TCTAAGACAAAGAAGGTATTCCCCCAGA 46780 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || | | |||| || || || ||| |||||||||| | | ||| | || || Sbjct 46779 TTAATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTA 46720 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||| |||||||||| || || |||||||| |||| || ||||||||| Sbjct 46719 CAATATTTAAAAAGAATCAACACTCCATTTAGTCTTAAGACTTAGAGGAGGA 46668 Score = 102 bits (112), Expect = 7e-17 Identities = 165/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| || || || || || ||||| ||| | ||||| | || || || | Sbjct 47583 AATAATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGC 47524 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 || ||| |||| || |||| |||| |||| || ||||||||||| ||||| | Sbjct 47523 TTCCGACTCTATTGAAAACGTCA---AAGCTAAAA-TCTAAGACAAAGAAGGTATTCCCC 47468 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || | | |||| || || || ||| |||||||||| | | ||| | | Sbjct 47467 CAGATTAATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTG 47408 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||||||| |||||||||| || || |||||||| | || ||||||| || Sbjct 47407 ACTACAATATTTAAAAAGAATCAACCCTCCATTTAGTCTTGAGATTAAGAGGTGG 47353 >seq1314 Length=139336 Score = 107 bits (118), Expect = 2e-18 Identities = 177/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 24974 AAGATAATTTGTACAAAACGGAAC---AATGCAAATATTTGTAAAGACTTTGACCGGTAA 25030 || ||||||| | ||||| || |||| |||| || || || ||||| || || || Sbjct 38633 AAAATAATTTAAAAAAAACAAAAAGAAAATGTAAATTTTCGTTAAAACTTTAACAGGAAA 38574 Query 25031 ATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCAC 25090 | |||| || | || || || | ||||| | || || | ||| |||||| Sbjct 38573 AACCATTACTTTAGATGTTGAAGCTTCTGATTCAATTGAAAATGTAAAGGCAAAAATTTA 38514 Query 25091 TGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGA 25150 ||||| ||||| |||||||| || || | | ||||||| || || ||| ||||||| Sbjct 38513 AGACAAGGAAGGAATTCCACCAGATTAATAAAGACTTATTTTCGCTGGTAAATAATTAGA 38454 Query 25151 AGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| | | ||| | |||||||||||| |||| |||||||| || ||||| || | Sbjct 38453 AGACGGCAGAACTCTTTCTGATTACAATATTTAAAAGGAATCCACTCTCCATTTGGTTTT 38394 Query 25211 AAGGCTAAGAGGAGG 25225 || |||||||||| Sbjct 38393 GAGATTAAGAGGAGG 38379 >seq1038 Length=46086 Score = 82.4 bits (90), Expect = 7e-11 Identities = 161/236 (68%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||| |||| ||||| || || || || || ||| | || ||| | || || || | Sbjct 43839 AAAAATGTAAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGACGTAGAAGC 43898 Query 25055 GTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCAC 25110 ||||| | || || || | |||| || | | | || || ||||| ||||| | Sbjct 43899 TTCTGATTCAATTGAAAACGTAA---AAGCCAAGATTTAA-GATAAGGAAGGTATTCCTC 43954 Query 25111 CTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCG 25170 | || || | | | ||||| || || ||| |||||||||||| | || | | Sbjct 43955 CAGATTAATAAAGATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAG 44014 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||||||||| |||| || || || || |||||||| |||| ||||||| ||| Sbjct 44015 ATTACAATATTTAAAAGGAGTCAACTCTCCATTTAGTTTTAAGATTAAGAGGCGGA 44070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433317347849855