Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1353 242 4e-59 >seq1353 Length=60684 Score = 242 bits (268), Expect = 4e-59 Identities = 434/624 (70%), Gaps = 11/624 (2%) Strand=Plus/Minus Query 93074 ACATAATTG--TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCA 93131 |||| |||| || | || || ||||| || |||||||| |||||||||| |||||| | Sbjct 30150 ACATCATTGAGTAAAGCAAACAAGCAAAATCTGTATGTAATCCTTCGTCTCTTGATATTA 30091 Query 93132 ACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAG 93191 | ||||| || |||||||| || | | || ||| || |||||||| || | | Sbjct 30090 ATTCATTTGAAAAAGTTAAACCAGGCATTAAAGATCTTTTTTTAAGCCAAAAAATGGC-G 30032 Query 93192 CA-AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCA 93250 || ||||| ||| || || || ||||| | ||||||||||| || | || || Sbjct 30031 CAGAAACTTCCACTGAAGAAGATTCCTTCAATAGCTGCAAATGCAACTAATCGAGAAGCG 29972 Query 93251 AAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAA 93310 ||||| | |||| | | ||||||||||||||||| | |||||||| || || | Sbjct 29971 AAATTGTC---ATTATTATTAATCCATTTTAAAGCCCATTAAGCTTTTTTATTTATTACA 29915 Query 93311 GGTAGTGTTTCGATA-GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGT 93369 || | | ||| || | || ||||| || | ||| || | |||| ||| || || Sbjct 29914 GGAA-TATTTAGACAAGCTTTAAAAAGAAACTCTTTTTCATTATCATCTTTTATATAAGT 29856 Query 93370 ATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTA 93429 ||| ||||| | |||||| |||| ||||| | ||| ||||| || |||| ||||| || Sbjct 29855 ATCTATTAATAAAGAATAAGTTTCGGAATGAATATTTTCCATAGCTATTTAAAATCCATA 29796 Query 93430 GAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATT 93489 |||| ||| ||||| | || | ||||| |||| || | | |||||| Sbjct 29795 GAAAGCTCTTGCTTCTGGAATTTAAACTTCACACATAAATTATTCAGCTAAATTTTCTAG 29736 Query 93490 GACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 || || ||||| || ||||||||||| || | | || ||| ||||| ||| |||| | Sbjct 29735 AACAATTCCATCTGAAGCTGCAAAAAATGCAAGAACATACTTAATAAAGTGTCTCTCGCC 29676 Query 93550 ATCTTT-AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCC 93608 ||| | || ||| |||||||| | ||||| ||||||| | ||| || | |||| Sbjct 29675 ATCAGTCAATCTT-TCCCAATCTTTCAAATCTTAATAAAGATCAATTTCGTCTGCTGTCC 29617 Query 93609 AAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATA 93668 |||| || || | ||||||||||||| |||||||| | | ||||| ||||| || | Sbjct 29616 AAAATGAAGCGAGTTCTTTTTTGTACATTTCCCATATTTTATTATATTTTATTGGGAACA 29557 Query 93669 TGACAAAACGATTAGGGTTATCTT 93692 | ||||| | || || || |||| Sbjct 29556 TAACAAATCTGTTTGGATTTTCTT 29533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556846760147080