Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq1181 107 2e-18 seq1314 93.3 4e-14 seq892 89.7 4e-13 >seq1181 Length=100449 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 ||||||| ||||||| |||||||| | || || ||||| || || | || || | Sbjct 75137 AAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGC 75078 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 |||||| ||| | || ||| |||||| ||||||||||| |||| || Sbjct 75077 ATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGA 75018 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 | || |||| ||||| | ||| || ||| ||||||||||| | |||| | | ||||| Sbjct 75017 TTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTA 74958 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||||| |||||||||| || || |||||||| ||| Sbjct 74957 CAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTG 74921 >seq1314 Length=139336 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 |||||| ||||||| || ||||| | || || ||||||||||| | || ||| | Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 ||||| ||| | ||||| ||||||| ||||| ||||| |||| ||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || |||| ||||||| || || ||| |||| ||||| | |||| | | ||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||||| |||| ||||| || || ||||| || ||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTG 38393 >seq892 Length=79579 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||| |||| || |||||||| | ||||| ||||| || || | || ||| | | Sbjct 46895 ATGTAAATCTTCGTCAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGCTTCC 46836 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || ||| ||| | || ||| ||||| ||||||||||| ||||| ||| || Sbjct 46835 GACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGATTAA 46776 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 |||| ||||| | || || ||| |||| ||||| | |||| | | || || ||| Sbjct 46775 TAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTACAAT 46716 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTT 111398 || |||||||||| ||||| |||||||| || Sbjct 46715 ATTTAAAAAGAATCAACACTCCATTTAGTCTT 46684 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 111183 AAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACC 111242 || |||| |||| || || ||||| | ||||| ||||| || || | || ||| | Sbjct 47583 AATAATGTAAATCTTCGTTAAAACATTAACCGGAAAAACAATCACTTTAGATGTTGAAGC 47524 Query 111243 CAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGA 111302 ||| ||| ||| | || ||| ||||| ||||||||||| ||||| || Sbjct 47523 TTCCGACTCTATTGAAAACGTCAAAGCTAAAATCTAAGACAAAGAAGGTATTCCCCCAGA 47464 Query 111303 TCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 111362 | || |||| ||||| | || || ||| |||| ||||| | |||| | | || || Sbjct 47463 TTAATAAAGACTTATCTTCGCAGGAAAATAATTAGAAGACGGAAGAACTCTTTCTGACTA 47404 Query 111363 TAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||||| |||||||||| || || |||||||| ||| Sbjct 47403 CAATATTTAAAAAGAATCAACCCTCCATTTAGTCTTG 47367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423029600751400