Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1181 152 4e-32 seq1314 138 1e-27 seq1038 98.7 8e-16 seq861 82.4 6e-11 >seq1181 Length=100449 Score = 152 bits (168), Expect = 4e-32 Identities = 173/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| ||||||| || ||||| ||||| |||||||| ||||| | || || || | Sbjct 75137 AAAAATGTAAATTTTCGTCAAAACATTAACAGGTAAAACAATCACTTTAGATGTTGAGGC 75078 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 ||||| | | || || | ||| |||||| ||||||| || || ||||| || || Sbjct 75077 ATCCGATTCAATTGAAAATGTTAAAGCCAAAATTTAAGACAAAGAAGGAATTCCTCCAGA 75018 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 | || || | |||||||||||||| ||| | || || ||| | | || | || ||||| Sbjct 75017 TTAATAAAGACTTATATTTGCCGGAAAATAATTGGAAGATGGCAGAACTCTTTCAGATTA 74958 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| ||| ||||||||||||| | |||||||||||| |||| | |||||| Sbjct 74957 CAATATTTAAAAAGAATCCACTCTCCATTTAGTTTTGAGATTAAGAGGAGGT 74906 >seq1314 Length=139336 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||| ||||||| |||||||||||||| || ||||| | ||| | || || ||| | Sbjct 38608 AAAATGTAAATTTTCGTTAAAACTTTAACAGGAAAAACCATTACTTTAGATGTTGAAGCT 38549 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | || || | || ||||||| |||||||||| || |||||||| ||| Sbjct 38548 TCTGATTCAATTGAAAATGTAAAGGCAAAAATTTAAGACAAGGAAGGAATTCCACCAGAT 38489 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | ||||| || || || ||| | ||||| || | | || | || |||||| Sbjct 38488 TAATAAAGACTTATTTTCGCTGGTAAATAATTAGAAGACGGCAGAACTCTTTCTGATTAC 38429 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||| |||| |||||||| | ||||| |||||| |||| | |||||| Sbjct 38428 AATATTTAAAAGGAATCCACTCTCCATTTGGTTTTGAGATTAAGAGGAGGT 38378 >seq1038 Length=46086 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||| |||||||||||||||| ||||| || ||||| | || | || || ||| | Sbjct 43839 AAAAATGTAAATTTTTGTTAAAACCTTAACTGGAAAAACTATTACATTAGACGTAGAAGC 43898 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | ||| | | || | | ||| || ||| |||| ||||| |||||||| || || Sbjct 43899 TTCTGATTCAATTGAAAACGTAAAAGCCAAGATTTAAGATAAGGAAGGTATTCCTCCAGA 43958 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 | || || | | || || || || ||| | ||||| ||| | || | || ||||| Sbjct 43959 TTAATAAAGATTAATTTTCGCAGGAAAATAATTAGAAGATGGAAGAACACTTTCAGATTA 44018 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 ||| ||| |||| || || || | ||||||||||| |||| Sbjct 44019 CAATATTTAAAAGGAGTCAACTCTCCATTTAGTTTTAAGATT 44060 >seq861 Length=133231 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 129679 ACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTG 129738 ||||||| | | | |||| || |||||||| || || ||| |||| | | | | Sbjct 47967 ACAAATTTTTATAAAGAAATAGAAGCCAAATTACATACAGCAATTTCATCTGGTGAAGTA 48026 Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 || || | |||||| | |||||||| | || |||| || ||||||| | || |||| Sbjct 48027 TATTCAATAATTTCAGTACACAAATTTGAACTTCTAATAGTCCCCAAATTTTATTAATTA 48086 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTC 129848 ||||| | || ||||||||||| || | ||| || || || || ||||| Sbjct 48087 CTTTTTCTATTACAAGCATCTTTATATAACATATAAGGAGTTCCAGTTTC 48136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419717682167605