Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1232 93.3 9e-14 seq997 93.3 9e-14 seq1142 91.5 3e-13 >seq1232 Length=140092 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||| Sbjct 29402 ATCGCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCG 29461 Query 142561 AGCCCC 142566 |||||| Sbjct 29462 AGCCCC 29467 >seq997 Length=30465 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 || ||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||| Sbjct 27056 ATTGCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCG 26997 Query 142561 AGCCCC 142566 |||||| Sbjct 26996 AGCCCC 26991 >seq1142 Length=95975 Score = 91.5 bits (100), Expect = 3e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||||||||||||||| ||||||||||||| |||||| |||||||||| Sbjct 40284 GCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCGAGC 40225 Query 142564 CCC 142566 ||| Sbjct 40224 CCC 40222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027810237806297