Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1314 129 1e-24 seq1038 118 2e-21 seq1232 89.7 9e-13 seq1142 87.8 3e-12 seq997 87.8 3e-12 >seq1314 Length=139336 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 68249 CAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATC 68308 ||| ||||| || || ||||| || |||| || || ||||| || || || || || || Sbjct 38393 CAAAACCAAATGGAGAGTGGATTCCTTTTAAATATTGTAATCAGAAAGAGTTCTGCCGTC 38452 Query 68309 TTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTC 68368 |||||| | || || ||||| || ||||||| || || |||||||| ||||||||||| Sbjct 38453 TTCTAATTATTTACCAGCGAAAATAAGTCTTTATTAATCTGGTGGAATTCCTTCCTTGTC 38512 Query 68369 TTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGT 68428 || ||| |||||||| || || || | || | | ||| || || || || ||||| Sbjct 38513 TTAAATTTTTGCCTTTACATTTTCAATTGAATCAGAAGCTTCAACATCTAAAGTAATGGT 38572 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 |||||| || | || || ||||| || | |||| Sbjct 38573 TTTTCCTGTTAAAGTTTTAACGAAAATTTACATT 38606 >seq1038 Length=46086 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || || || || || ||||| |||| || || ||||| || ||||| || |||||| Sbjct 44054 AAAACTAAATGGAGAGTTGACTCCTTTTAAATATTGTAATCTGAAAGTGTTCTTCCATCT 43995 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| | || || ||||| || | ||||| || || || ||||| |||||||| ||| Sbjct 43994 TCTAATTATTTTCCTGCGAAAATTAATCTTTATTAATCTGGAGGAATACCTTCCTTATCT 43935 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 | |||||| || || ||| || || | || | | |||||| || || || || ||| Sbjct 43934 TAAATCTTGGCTTTTACGTTTTCAATTGAATCAGAAGCTTCTACGTCTAATGTAATAGTT 43875 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| || | ||| || || || || | |||| Sbjct 43874 TTTCCAGTTAAGGTTTTAACAAAAATTTACATT 43842 >seq1232 Length=140092 Score = 89.7 bits (98), Expect = 9e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 84455 CGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 84514 |||||| ||||||||||||| |||||||||| ||||||| ||||||||| ||||||||| Sbjct 29404 CGCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCGAG 29463 Query 84515 CCCC 84518 |||| Sbjct 29464 CCCC 29467 >seq1142 Length=95975 Score = 87.8 bits (96), Expect = 3e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 84453 AGCGCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 84512 || ||||| ||||||||||||| |||||||||| ||||||| ||||||||| ||||||| Sbjct 40287 AGGGCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCG 40228 Query 84513 AGCCCC 84518 |||||| Sbjct 40227 AGCCCC 40222 >seq997 Length=30465 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| ||||||||||||| |||||||||| ||||||| ||||||||| |||||||||| Sbjct 27053 GCCCGCTTAGCTCAGTCGGTAGAGCGCAAGACTCTTAATCTTGTGGTCAGGGGTTCGAGC 26994 Query 84516 CCC 84518 ||| Sbjct 26993 CCC 26991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921599163595240