Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq892 87.8 2e-12 seq1181 86.0 5e-12 >seq892 Length=79579 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/250 (68%), Gaps = 2/250 (1%) Strand=Plus/Plus Query 114145 ATTTACAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGT 114204 ||||||| |||| || | || |||||| |||||||| | || |||||||||| ||| | Sbjct 47344 ATTTACA--TACCACCTCTTAATCTCAAGACTAAATGGAGGGTTGATTCTTTTTAAATAT 47401 Query 114205 TGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTT 114264 |||| || | ||| | ||||| | || ||| || ||| |||| || | | || Sbjct 47402 TGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAAGATAAGTCTTTATT 47461 Query 114265 GGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGG 114324 || || ||||| ||||||||||| || || ||| | | ||||| | ||||| Sbjct 47462 AATCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGACGTTTTCAATAGAGTCGG 47521 Query 114325 TGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 114384 | ||| || || | || | ||||| ||||| | ||||| || || || | ||| Sbjct 47522 AAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTTAACGAAGATTTACATTA 47581 Query 114385 CTTAATTATT 114394 ||| ||||| Sbjct 47582 TTTATTTATT 47591 >seq1181 Length=100449 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || | || ||||||||||||||| | || |||||||||| ||| |||||||| Sbjct 74906 ACCTCCTCTTAATCTCAAAACTAAATGGAGAGTGGATTCTTTTTAAATATTGTAATCTGA 74965 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||| | |||||| | || ||| || || | || || | | || || ||||| Sbjct 74966 AAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAATATAAGTCTTTATTAATCTGGAGG 75025 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||||||||| ||| ||| | |||| | | ||||| | |||| | || | Sbjct 75026 AATTCCTTCTTTGTCTTAAAT-TTTGGCTTTAACATTTTCAATTGAATCGGATGCCTCAA 75084 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | || | ||||| || || | ||||| || ||||| | ||| Sbjct 75085 CATCTAAAGTGATTGTTTTACCTGTTAATGTTTTGACGAAAATTTACAT 75133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420124072177404