Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ichthyophthirius_20multifiliis_20[genbank_20GCA_5F000220395.1_202011 -07-18] 2,017 sequences; 48,799,969 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq892 136 9e-27 seq1181 86.0 1e-11 >seq892 Length=79579 Score = 136 bits (150), Expect = 9e-27 Identities = 161/214 (75%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||||| ||||| | || || | |||||||||||||| |||||||||||| Sbjct 47388 TTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAA 47447 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||||||| || |||||||| || | |||||| ||||| || Sbjct 47448 GATAAGTCTTTATT---AATCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGAC 47504 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| ||||| ||| | ||| || || | ||||| || || ||||| | || || Sbjct 47505 GTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 47564 Query 288459 GACGAATATCTGCATTATGTTATTCTAATATTTT 288492 ||||| || | |||||| ||||| || | |||| Sbjct 47565 AACGAAGATTTACATTAT-TTATT-TATTTTTTT 47596 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||||| ||||| | || || | |||||||||||||| |||||||||||| Sbjct 46704 TTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAA 46763 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||||||| || |||||||| || | |||||| ||||| || Sbjct 46764 GATAAGTCTTTATT---AATCTGGGGGAATACCTTCTTTGTCTTAGATTTTAGCTTTGAC 46820 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| ||||| ||| | ||| || || | ||||| || || ||||| | || || Sbjct 46821 GTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 46880 Query 288459 GACGAATATCTGCAT 288473 |||||| || | ||| Sbjct 46881 GACGAAGATTTACAT 46895 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||||| ||||| | || || | |||||||||||||| |||||||||||| Sbjct 46932 TTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAA 46991 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||||||| || ||||||||||| | |||||| ||||| || Sbjct 46992 GATAAGTCTTTATT---AATCTGGGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGAC 47048 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| ||||| ||| | ||| || || | ||||| || || ||||| | || || Sbjct 47049 ATTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 47108 Query 288459 GACGAATATCTGCAT 288473 |||||| || | ||| Sbjct 47109 GACGAAGATTTACAT 47123 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||||| ||||| | || || | |||||||||||||| |||||||||||| Sbjct 47160 TTCTTTTTAAATATTGTAGTCAGAAAGAGTTCTTCCGTCTTCTAATTATTTTCCTGCGAA 47219 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | | || |||||||| || ||||||||||| | |||||| ||||| || Sbjct 47220 GATAAGTCTTTATT---AATCTGGGGGAATACCTTCTTTATCTTAGATTTTAGCTTTGAC 47276 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| ||||| ||| | ||| || || | ||||| || || ||||| | || || Sbjct 47277 GTTTTCAATAGAGTCGGAAGCTTCAACATCTAAAGTGATTGTTTTTCCGGTTAATGTTTT 47336 Query 288459 GACGAATATCTGCAT 288473 ||||| || | ||| Sbjct 47337 AACGAAGATTTACAT 47351 >seq1181 Length=100449 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/215 (69%), Gaps = 9/215 (4%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||||| ||||| || || | || || | || ||||| |||| |||||| || || Sbjct 74942 TTCTTTTTAAATATTGTAATCTGAAAGAGTTCTGCCATCTTCCAATTATTTTCCGGCAAA 75001 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || || | | || ||||||| ||||||||||| || | ||||| ||||| || Sbjct 75002 TATAAGTCTTTATT---AATCTGGAGGAATTCCTTCTTTGTCTTAAATTTTGGCTTTAAC 75058 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || |||||| | || || || | ||||| || || || || | || || Sbjct 75059 ATTTTCAATTGAATCGGATGCCTCAACATCTAAAGTGATTGTTTTACCTGTTAATGTTTT 75118 Query 288459 GACGAATATCTGCATTATGTTATTCTAATATTTTT 288493 |||||| || | |||| || || ||| ||||| Sbjct 75119 GACGAAAATTTACATT---TTTTTTAAATTTTTTT 75150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179623914412526